FastQCFastQC Report
Thu 11 Jun 2020
HCCY2BGXF_n01_ph-bZIP63..ps-bZIP1_Col..h-B_p1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCY2BGXF_n01_ph-bZIP63..ps-bZIP1_Col..h-B_p1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7422165
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGG48800.029.40544942
TCGGGGG40950.027.35015943
AATCGGG58750.026.3912341
CGGGGGT22500.025.97752244
GAATCGG67700.022.95398340
CACTCCG88550.022.29227331
TCCGGAG91200.021.9131634
ACTCCGG90650.021.85306732
CTCCGGA93450.021.23574633
AGAATCG80050.020.50573339
CGGGGGG28950.019.22260944
CGGAGAA103900.018.79673636
TCACTCC104700.018.78695330
CCGGAGA105200.018.69753535
GTCACTC108750.018.18385329
TCGGGGT16300.016.96302443
CAGTCAC117900.016.7429527
CTCCAGT121800.016.43673124
AGTCACT120950.016.3496828
TCCAGTC122150.016.24636825
Produced by FastQC (version 0.11.5)