FastQCFastQC Report
Thu 11 Jun 2020
HCCY2BGXF_n01_ph-bZIP63..ps-bZIP11_Col..h-B_p1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCY2BGXF_n01_ph-bZIP63..ps-bZIP11_Col..h-B_p1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7488666
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG21800.021.99511748
ATGCCGT23800.019.70561849
GTATGCC26300.018.36477347
CGTATGC26300.017.96553846
GCCGTCT25850.016.65354751
TGCCGTC27300.016.41003650
TCGTATG30000.015.39979445
CTCGTAT29350.014.66760544
CCGTCTT35850.011.91057952
CACGAGA43200.011.74752831
CTGCTTG37950.011.34372159
TCACGAG44500.011.3256930
TCTCGTA35350.011.28697743
GTCACGA45950.010.96829629
AGTCACG48850.010.532128
CGAGATT53350.09.64373133
GCTTGAA49500.09.61603361
CTCCAGT54900.09.30770724
ACTCCAG56650.09.02017923
CGTCTTC49850.08.9868453
Produced by FastQC (version 0.11.5)