FastQCFastQC Report
Thu 11 Jun 2020
HCCY2BGXF_n01_ph-bZIP10..ps-bZIP11_Col..h-B_p1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCY2BGXF_n01_ph-bZIP10..ps-bZIP11_Col..h-B_p1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8874879
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG21400.017.99041748
ATGCCGT23450.016.8654549
GCCGTCT24350.015.66714651
TGCCGTC26000.015.34595250
GTATGCC25050.015.22934147
CGTATGC26450.014.55557346
TCGTATG30000.013.29982645
CTCGTAT29550.012.08105944
CCGTCTT39350.010.49541552
CACGAGA41200.09.8542431
TCACGAG41950.09.59462930
GTCACGA44900.09.12014829
AGTCACG49550.08.5468128
CGAGATT50600.08.50779333
TCTCGTA38200.08.42920943
CTGCTTG39050.08.42498659
CTCCAGT51350.08.24726124
ACTCCAG52000.08.1441723
AAGGGGG12101.8189894E-127.80981570
GAACTCC52700.07.70397121
Produced by FastQC (version 0.11.5)