FastQCFastQC Report
Thu 11 Jun 2020
HCCY2BGXF_n01_bZIP11_Col-B_p1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHCCY2BGXF_n01_bZIP11_Col-B_p1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11044101
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG28800.019.44425648
ATGCCGT32700.016.91115249
GTATGCC32850.016.83393147
CGTATGC34100.016.52476746
TGCCGTC36350.015.50191350
GCCGTCT35400.015.3247151
TCGTATG42100.013.46780445
CTCGTAT38950.012.84968344
CCGTCTT50700.010.76912749
TTACTCG58050.010.24968735
GATCTCG43800.010.06839738
TCTCGTA51550.09.233664543
CTGCTTG56250.09.208859
CGATCTC52950.08.32853140
ATTACTC75600.08.194365531
CTCCAGT75900.08.115924
CTTCTGC70850.08.10158256
CACATTA77900.07.99735531
ACATTAC82700.07.956392332
ACTCCAG79000.07.930303623
Produced by FastQC (version 0.11.5)