FastQCFastQC Report
Sat 11 Jun 2022
HC5NHDRX2_4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHC5NHDRX2_4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences830419037
Sequences flagged as poor quality0
Sequence length49
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG133371691.6060769811085147No Hit
CGTGGGCTCGGAGATGTGTATAAGCTGTCTCTTATACACATCTGACGCT9835560.11844092634885008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)