FastQCFastQC Report
Fri 14 Jun 2024
HC5FNDRX5_l01_n01_PdaTF1_Pda-B_ak.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHC5FNDRX5_l01_n01_PdaTF1_Pda-B_ak.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3899124
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTAT92140.23630948900317097TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCGCGTAT52140.1337223437879893TruSeq Adapter, Index 8 (97% over 36bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)