FastQCFastQC Report
Sat 24 Aug 2024
HC3CLAFX7_n01_11689-sp-in.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHC3CLAFX7_n01_11689-sp-in.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19085292
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTAT250150.13106951677763168TruSeq Adapter, Index 13 (97% over 40bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)