FastQCFastQC Report
Fri 13 Dec 2019
HC2GYBCX3_l02_n01_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHC2GYBCX3_l02_n01_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33651716
Sequences flagged as poor quality0
Sequence length151
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG364300.09.5374183
ATCGGAA372050.09.5113482
GATCGGA378600.09.2347451
AGAGCAC391650.09.1065848
GAGCACA449450.07.87197839
CGGAAGA459600.07.87024644
AAGAGCA495550.07.5427217
GGAAGAG533750.06.75015745
GAAGAGC586650.06.4211576
Produced by FastQC (version 0.11.5)