| Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
|---|
| 1 | 16hr_10 | GAGATTCC-GGCTCTGA | N | lane1 | 219 | 100.00 | 4,293,430 | 2.64 | 95.43 | 4.46 | 93.35 | 36.56 | ||
| 1 | 16hr_11 | ATTCAGAA-TATAGCCT | N | lane1 | 172 | 100.00 | 3,367,547 | 2.07 | 96.85 | 3.09 | 93.69 | 36.71 | ||
| 1 | 16hr_12 | ATTCAGAA-ATAGAGGC | N | lane1 | 124 | 100.00 | 2,434,497 | 1.50 | 96.68 | 3.24 | 93.79 | 36.73 | ||
| 1 | 16hr_13 | ATTCAGAA-CCTATCCT | N | lane1 | 169 | 100.00 | 3,315,972 | 2.04 | 96.89 | 3.05 | 93.95 | 36.80 | ||
| 1 | 16hr_14 | ATTCAGAA-GGCTCTGA | N | lane1 | 198 | 100.00 | 3,881,747 | 2.38 | 96.72 | 3.21 | 93.51 | 36.63 | ||
| 1 | 16hr_15 | GAATTCGT-TATAGCCT | N | lane1 | 210 | 100.00 | 4,124,743 | 2.53 | 95.89 | 4.04 | 93.94 | 36.79 | ||
| 1 | 16hr_16 | GAATTCGT-ATAGAGGC | N | lane1 | 225 | 100.00 | 4,412,265 | 2.71 | 95.84 | 4.06 | 93.91 | 36.73 | ||
| 1 | 16hr_17 | GAATTCGT-CCTATCCT | N | lane1 | 293 | 100.00 | 5,742,301 | 3.53 | 95.88 | 4.05 | 94.01 | 36.81 | ||
| 1 | 16hr_18 | GAATTCGT-GGCTCTGA | N | lane1 | 196 | 100.00 | 3,841,926 | 2.36 | 95.76 | 4.15 | 93.85 | 36.74 | ||
| 1 | 16hr_19 | CGGCTATG-ATAGAGGC | N | lane1 | 163 | 100.00 | 3,189,854 | 1.96 | 95.94 | 3.96 | 93.33 | 36.60 | ||
| 1 | 16hr_1 | CGCTCATT-TATAGCCT | N | lane1 | 122 | 100.00 | 2,401,848 | 1.48 | 96.67 | 3.26 | 93.28 | 36.52 | ||
| 1 | 16hr_20 | TCCGCGAA-TATAGCCT | N | lane1 | 324 | 100.00 | 6,343,647 | 3.90 | 96.07 | 3.84 | 92.71 | 36.23 | ||
| 1 | 16hr_3 | CGCTCATT-ATAGAGGC | N | lane1 | 132 | 100.00 | 2,584,679 | 1.59 | 96.54 | 3.37 | 93.10 | 36.46 | ||
| 1 | 16hr_5 | CGCTCATT-CCTATCCT | N | lane1 | 130 | 100.00 | 2,545,746 | 1.56 | 96.56 | 3.37 | 93.45 | 36.58 | ||
| 1 | 16hr_6 | CGCTCATT-GGCTCTGA | N | lane1 | 138 | 100.00 | 2,705,279 | 1.66 | 96.49 | 3.43 | 93.24 | 36.51 | ||
| 1 | 16hr_7 | GAGATTCC-TATAGCCT | N | lane1 | 133 | 100.00 | 2,601,244 | 1.60 | 95.67 | 4.25 | 93.78 | 36.75 | ||
| 1 | 16hr_8 | GAGATTCC-ATAGAGGC | N | lane1 | 217 | 100.00 | 4,249,325 | 2.61 | 95.62 | 4.29 | 93.72 | 36.72 | ||
| 1 | 16hr_9 | GAGATTCC-CCTATCCT | N | lane1 | 205 | 100.00 | 4,025,176 | 2.47 | 95.65 | 4.27 | 93.73 | 36.73 | ||
| 1 | 5hr_1 | ATTACTCG-TATAGCCT | N | lane1 | 208 | 100.00 | 4,084,429 | 2.51 | 96.95 | 2.99 | 94.25 | 36.89 | ||
| 1 | 5hr_2 | ATTACTCG-ATAGAGGC | N | lane1 | 247 | 100.00 | 4,839,654 | 2.97 | 96.82 | 3.11 | 94.27 | 36.89 | ||
| 1 | 5hr_3 | ATTACTCG-CCTATCCT | N | lane1 | 205 | 100.00 | 4,018,593 | 2.47 | 96.82 | 3.13 | 94.03 | 36.83 | ||
| 1 | 5hr_4 | ATTACTCG-GGCTCTGA | N | lane1 | 241 | 100.00 | 4,725,989 | 2.90 | 96.69 | 3.24 | 94.17 | 36.86 | ||
| 1 | 5hr_5 | TCCGGAGA-TATAGCCT | N | lane1 | 188 | 100.00 | 3,685,882 | 2.26 | 96.48 | 3.46 | 94.32 | 36.91 | ||
| 1 | 5hr_6 | TCCGGAGA-ATAGAGGC | N | lane1 | 165 | 100.00 | 3,232,417 | 1.99 | 96.33 | 3.58 | 94.24 | 36.88 | ||
| 1 | 5hr_7 | TCCGGAGA-CCTATCCT | N | lane1 | 124 | 100.00 | 2,435,764 | 1.50 | 96.49 | 3.45 | 93.95 | 36.80 | ||
| 1 | 5hr_8 | TCCGGAGA-GGCTCTGA | N | lane1 | 78 | 100.00 | 1,536,710 | 0.94 | 96.29 | 3.63 | 94.10 | 36.83 | ||
| 1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 218 | 100.00 | 4,276,114 | 2.63 | 0.00 | 0.00 | 89.06 | 35.50 |
| 1 | uncut_10_old | AGCGATAG-CAGGACGT | N | lane1 | 198 | 100.00 | 3,872,767 | 2.38 | 95.39 | 4.46 | 93.01 | 36.46 | ||
| 1 | uncut_11_old | AGCGATAG-GTACTGAC | N | lane1 | 154 | 100.00 | 3,016,387 | 1.85 | 95.55 | 4.30 | 93.48 | 36.62 | ||
| 1 | uncut_1 | CTGAAGCT-TATAGCCT | N | lane1 | 286 | 100.00 | 5,603,668 | 3.44 | 96.93 | 3.01 | 93.63 | 36.65 | ||
| 1 | uncut_1_old | TCTCGCGC-CAGGACGT | N | lane1 | 551 | 100.00 | 10,802,184 | 6.64 | 93.74 | 6.02 | 92.05 | 35.90 | ||
| 1 | uncut_2 | CTGAAGCT-ATAGAGGC | N | lane1 | 214 | 100.00 | 4,205,128 | 2.58 | 96.63 | 3.29 | 93.28 | 36.48 | ||
| 1 | uncut_3 | CTGAAGCT-CCTATCCT | N | lane1 | 589 | 100.00 | 11,544,786 | 7.09 | 96.89 | 3.04 | 93.59 | 36.60 | ||
| 1 | uncut_4 | CTGAAGCT-GGCTCTGA | N | lane1 | 271 | 100.00 | 5,304,541 | 3.26 | 96.74 | 3.19 | 93.47 | 36.59 | ||
| 1 | uncut_5 | TAATGCGC-TATAGCCT | N | lane1 | 210 | 100.00 | 4,114,460 | 2.53 | 96.52 | 3.41 | 92.50 | 36.25 | ||
| 1 | uncut_6 | TAATGCGC-ATAGAGGC | N | lane1 | 259 | 100.00 | 5,070,431 | 3.11 | 96.35 | 3.55 | 93.23 | 36.46 | ||
| 1 | uncut_7 | TAATGCGC-CCTATCCT | N | lane1 | 191 | 100.00 | 3,736,546 | 2.30 | 96.45 | 3.48 | 93.55 | 36.68 | ||
| 1 | uncut_8 | TAATGCGC-GGCTCTGA | N | lane1 | 169 | 100.00 | 3,308,306 | 2.03 | 96.31 | 3.62 | 92.96 | 36.51 | ||
| 1 | uncut_9_old | TCTCGCGC-GTACTGAC | N | lane1 | 170 | 100.00 | 3,326,486 | 2.04 | 93.88 | 5.95 | 92.95 | 36.49 | ||
| 2 | 16hr_10 | GAGATTCC-GGCTCTGA | N | lane2 | 125 | 100.00 | 2,441,652 | 1.52 | 96.92 | 2.99 | 94.44 | 36.82 | ||
| 2 | 16hr_11 | ATTCAGAA-TATAGCCT | N | lane2 | 136 | 100.00 | 2,675,006 | 1.66 | 97.79 | 2.17 | 94.71 | 36.99 | ||
| 2 | 16hr_12 | ATTCAGAA-ATAGAGGC | N | lane2 | 251 | 100.00 | 4,929,987 | 3.07 | 97.80 | 2.15 | 94.79 | 37.00 | ||
| 2 | 16hr_13 | ATTCAGAA-CCTATCCT | N | lane2 | 231 | 100.00 | 4,524,514 | 2.82 | 97.84 | 2.12 | 94.93 | 37.07 | ||
| 2 | 16hr_14 | ATTCAGAA-GGCTCTGA | N | lane2 | 255 | 100.00 | 4,991,737 | 3.11 | 97.61 | 2.34 | 94.56 | 36.90 | ||
| 2 | 16hr_15 | GAATTCGT-TATAGCCT | N | lane2 | 197 | 100.00 | 3,867,701 | 2.41 | 97.38 | 2.57 | 94.91 | 37.07 | ||
| 2 | 16hr_16 | GAATTCGT-ATAGAGGC | N | lane2 | 194 | 100.00 | 3,799,128 | 2.36 | 97.33 | 2.60 | 94.90 | 36.98 | ||
| 2 | 16hr_17 | GAATTCGT-CCTATCCT | N | lane2 | 221 | 100.00 | 4,325,252 | 2.69 | 97.34 | 2.60 | 94.96 | 37.07 | ||
| 2 | 16hr_18 | GAATTCGT-GGCTCTGA | N | lane2 | 268 | 100.00 | 5,263,915 | 3.28 | 97.19 | 2.73 | 94.83 | 37.00 | ||
| 2 | 16hr_19 | CGGCTATG-ATAGAGGC | N | lane2 | 235 | 100.00 | 4,614,211 | 2.87 | 97.48 | 2.45 | 94.35 | 36.88 | ||
| 2 | 16hr_1 | CGCTCATT-TATAGCCT | N | lane2 | 32 | 100.00 | 627,632 | 0.39 | 97.44 | 2.50 | 94.20 | 36.75 | ||
| 2 | 16hr_20 | TCCGCGAA-TATAGCCT | N | lane2 | 298 | 100.00 | 5,849,458 | 3.64 | 96.92 | 2.98 | 93.94 | 36.46 | ||
| 2 | 16hr_3 | CGCTCATT-ATAGAGGC | N | lane2 | 52 | 100.00 | 1,022,698 | 0.64 | 97.50 | 2.43 | 94.04 | 36.69 | ||
| 2 | 16hr_5 | CGCTCATT-CCTATCCT | N | lane2 | 65 | 100.00 | 1,281,454 | 0.80 | 97.40 | 2.53 | 94.36 | 36.82 | ||
| 2 | 16hr_6 | CGCTCATT-GGCTCTGA | N | lane2 | 50 | 100.00 | 981,283 | 0.61 | 97.31 | 2.62 | 94.13 | 36.74 | ||
| 2 | 16hr_7 | GAGATTCC-TATAGCCT | N | lane2 | 122 | 100.00 | 2,398,732 | 1.49 | 97.28 | 2.66 | 94.83 | 37.04 | ||
| 2 | 16hr_8 | GAGATTCC-ATAGAGGC | N | lane2 | 151 | 100.00 | 2,959,318 | 1.84 | 97.26 | 2.67 | 94.73 | 37.00 | ||
| 2 | 16hr_9 | GAGATTCC-CCTATCCT | N | lane2 | 130 | 100.00 | 2,550,140 | 1.59 | 97.18 | 2.76 | 94.73 | 37.00 | ||
| 2 | 5hr_1 | ATTACTCG-TATAGCCT | N | lane2 | 85 | 100.00 | 1,664,842 | 1.04 | 97.83 | 2.14 | 95.25 | 37.18 | ||
| 2 | 5hr_2 | ATTACTCG-ATAGAGGC | N | lane2 | 168 | 100.00 | 3,303,679 | 2.06 | 97.86 | 2.10 | 95.26 | 37.18 | ||
| 2 | 5hr_3 | ATTACTCG-CCTATCCT | N | lane2 | 127 | 100.00 | 2,494,561 | 1.55 | 97.76 | 2.20 | 95.06 | 37.12 | ||
| 2 | 5hr_4 | ATTACTCG-GGCTCTGA | N | lane2 | 54 | 100.00 | 1,068,042 | 0.66 | 97.53 | 2.42 | 95.20 | 37.16 | ||
| 2 | 5hr_5 | TCCGGAGA-TATAGCCT | N | lane2 | 97 | 100.00 | 1,899,121 | 1.18 | 97.33 | 2.62 | 95.29 | 37.19 | ||
| 2 | 5hr_6 | TCCGGAGA-ATAGAGGC | N | lane2 | 45 | 100.00 | 888,570 | 0.55 | 97.34 | 2.60 | 95.21 | 37.16 | ||
| 2 | 5hr_7 | TCCGGAGA-CCTATCCT | N | lane2 | 179 | 100.00 | 3,519,098 | 2.19 | 97.44 | 2.51 | 94.98 | 37.09 | ||
| 2 | 5hr_8 | TCCGGAGA-GGCTCTGA | N | lane2 | 100 | 100.00 | 1,958,476 | 1.22 | 97.27 | 2.67 | 95.12 | 37.11 | ||
| 2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 235 | 100.00 | 4,602,711 | 2.86 | 0.00 | 0.00 | 91.91 | 36.20 |
| 2 | uncut_10_old | AGCGATAG-CAGGACGT | N | lane2 | 333 | 100.00 | 6,526,692 | 4.06 | 97.10 | 2.84 | 94.13 | 36.76 | ||
| 2 | uncut_11_old | AGCGATAG-GTACTGAC | N | lane2 | 1,510 | 100.00 | 29,616,086 | 18.43 | 97.45 | 2.49 | 94.60 | 36.92 | ||
| 2 | uncut_1 | CTGAAGCT-TATAGCCT | N | lane2 | 180 | 100.00 | 3,532,397 | 2.20 | 97.91 | 2.04 | 94.68 | 36.91 | ||
| 2 | uncut_1_old | TCTCGCGC-CAGGACGT | N | lane2 | 563 | 100.00 | 11,033,869 | 6.87 | 95.72 | 4.13 | 93.48 | 36.14 | ||
| 2 | uncut_2 | CTGAAGCT-ATAGAGGC | N | lane2 | 249 | 100.00 | 4,881,892 | 3.04 | 97.82 | 2.11 | 94.37 | 36.70 | ||
| 2 | uncut_3 | CTGAAGCT-CCTATCCT | N | lane2 | 220 | 100.00 | 4,322,263 | 2.69 | 97.81 | 2.12 | 94.66 | 36.83 | ||
| 2 | uncut_4 | CTGAAGCT-GGCTCTGA | N | lane2 | 163 | 100.00 | 3,189,179 | 1.98 | 97.73 | 2.21 | 94.55 | 36.86 | ||
| 2 | uncut_5 | TAATGCGC-TATAGCCT | N | lane2 | 138 | 100.00 | 2,709,060 | 1.69 | 97.57 | 2.37 | 93.74 | 36.53 | ||
| 2 | uncut_6 | TAATGCGC-ATAGAGGC | N | lane2 | 255 | 100.00 | 5,007,248 | 3.12 | 97.51 | 2.42 | 94.34 | 36.69 | ||
| 2 | uncut_7 | TAATGCGC-CCTATCCT | N | lane2 | 104 | 100.00 | 2,034,217 | 1.27 | 97.53 | 2.42 | 94.55 | 36.96 | ||
| 2 | uncut_8 | TAATGCGC-GGCTCTGA | N | lane2 | 105 | 100.00 | 2,058,248 | 1.28 | 97.33 | 2.61 | 94.00 | 36.80 | ||
| 2 | uncut_9_old | TCTCGCGC-GTACTGAC | N | lane2 | 270 | 100.00 | 5,284,784 | 3.29 | 96.12 | 3.80 | 94.04 | 36.79 |
| SampleID | Recipe | Operator | Directory |
|---|
| 16hr_10 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_10 | ||
| 16hr_11 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_11 | ||
| 16hr_12 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_12 | ||
| 16hr_13 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_13 | ||
| 16hr_14 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_14 | ||
| 16hr_15 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_15 | ||
| 16hr_16 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_16 | ||
| 16hr_17 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_17 | ||
| 16hr_18 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_18 | ||
| 16hr_19 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_19 | ||
| 16hr_1 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_1 | ||
| 16hr_20 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_20 | ||
| 16hr_3 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_3 | ||
| 16hr_5 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_5 | ||
| 16hr_6 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_6 | ||
| 16hr_7 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_7 | ||
| 16hr_8 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_8 | ||
| 16hr_9 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_16hr_9 | ||
| 5hr_1 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_1 | ||
| 5hr_2 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_2 | ||
| 5hr_3 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_3 | ||
| 5hr_4 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_4 | ||
| 5hr_5 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_5 | ||
| 5hr_6 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_6 | ||
| 5hr_7 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_7 | ||
| 5hr_8 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_5hr_8 | ||
| lane1 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane1 | ||
| uncut_10_old | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_10_old | ||
| uncut_11_old | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_11_old | ||
| uncut_1 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_1 | ||
| uncut_1_old | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_1_old | ||
| uncut_2 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_2 | ||
| uncut_3 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_3 | ||
| uncut_4 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_4 | ||
| uncut_5 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_5 | ||
| uncut_6 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_6 | ||
| uncut_7 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_7 | ||
| uncut_8 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_8 | ||
| uncut_9_old | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Project_lane1/Sample_uncut_9_old | ||
| lane2 | /export/data1/gencore/demux/HAUKPADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4