##FastQC 0.11.2 >>Basic Statistics pass #Measure Value Filename lane2_Undetermined_L002_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3433129 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.415340349867424 33.0 15.0 33.0 6.0 33.0 2 26.11086533596611 33.0 15.0 33.0 6.0 33.0 3 25.98674765789459 33.0 15.0 33.0 6.0 33.0 4 28.795333644613994 37.0 15.0 37.0 6.0 37.0 5 28.865246543313695 37.0 15.0 37.0 6.0 37.0 6 28.788356044879176 37.0 15.0 37.0 6.0 37.0 7 29.257604942896116 37.0 15.0 37.0 6.0 37.0 8 28.861953628890728 37.0 15.0 37.0 6.0 37.0 9 29.374415292871312 37.0 22.0 37.0 6.0 37.0 10 28.84078168924034 37.0 15.0 37.0 6.0 37.0 11 28.861244654657604 37.0 15.0 37.0 6.0 37.0 12 28.818085192837206 37.0 15.0 37.0 6.0 37.0 13 28.754537333144196 37.0 15.0 37.0 6.0 37.0 14 30.700143222116036 40.0 15.0 40.0 6.0 40.0 15 30.830032894190694 40.0 15.0 40.0 6.0 40.0 16 30.259050562912144 40.0 15.0 40.0 6.0 40.0 17 30.676956502362714 40.0 15.0 40.0 6.0 40.0 18 30.277323980543695 37.0 15.0 40.0 6.0 40.0 19 30.234058492995747 40.0 15.0 40.0 6.0 40.0 20 30.657148624476388 40.0 15.0 40.0 6.0 40.0 21 30.3423847458106 40.0 15.0 40.0 6.0 40.0 22 30.752728196347995 40.0 15.0 40.0 6.0 40.0 23 30.309383072992595 40.0 15.0 40.0 6.0 40.0 24 30.102354149814936 40.0 15.0 40.0 6.0 40.0 25 29.771203470653155 37.0 15.0 40.0 6.0 40.0 26 29.893265298216292 37.0 15.0 40.0 6.0 40.0 27 29.81457119729553 37.0 15.0 40.0 6.0 40.0 28 29.839883674630343 37.0 15.0 40.0 6.0 40.0 29 30.12119527113604 37.0 15.0 40.0 6.0 40.0 30 30.13688387473934 37.0 15.0 40.0 6.0 40.0 31 29.90891923956251 37.0 15.0 40.0 6.0 40.0 32 29.797670288532707 37.0 15.0 40.0 6.0 40.0 33 29.801329341251087 37.0 15.0 40.0 6.0 40.0 34 29.70509905104061 37.0 15.0 40.0 6.0 40.0 35 29.707894168847137 37.0 15.0 40.0 6.0 40.0 36 29.627249660586596 37.0 15.0 40.0 6.0 40.0 37 29.647754278968254 37.0 15.0 40.0 6.0 40.0 38 29.621267071525715 37.0 15.0 40.0 6.0 40.0 39 29.638104481363793 37.0 15.0 40.0 6.0 40.0 40 29.47345759509765 37.0 15.0 40.0 6.0 40.0 41 29.4847187507373 37.0 15.0 40.0 6.0 40.0 42 29.349870628222824 37.0 15.0 40.0 6.0 40.0 43 29.187008702556763 37.0 15.0 40.0 6.0 40.0 44 29.20199998310579 37.0 15.0 40.0 6.0 40.0 45 29.012445206690458 37.0 15.0 40.0 6.0 40.0 46 28.85975068224934 37.0 15.0 40.0 6.0 40.0 47 29.047225431960175 37.0 15.0 40.0 6.0 40.0 48 28.920386621067838 37.0 15.0 40.0 6.0 40.0 49 28.813013725962527 37.0 15.0 40.0 6.0 40.0 50 28.687055161632436 37.0 15.0 40.0 6.0 40.0 51 28.08187953321882 37.0 15.0 40.0 6.0 40.0 >>END_MODULE >>Per tile sequence quality pass #Tile Base Mean 2201 1 0.10275493151394244 2201 2 0.09754835611854773 2201 3 0.05144980906204211 2201 4 0.13182836575996504 2201 5 0.029787055281438768 2201 6 0.04192401431225434 2201 7 -0.0372070710832233 2201 8 0.02248968143880603 2201 9 -0.08992238828984966 2201 10 0.08102606239798504 2201 11 0.06599476198534404 2201 12 0.033225149272890775 2201 13 0.09200492448691477 2201 14 0.23249673805652904 2201 15 -0.009934011337072945 2201 16 0.11581584239913312 2201 17 -0.03219856726644821 2201 18 0.11195006425079157 2201 19 0.18287824689793197 2201 20 -0.004267085245540869 2201 21 1.8219449413692246E-4 2201 22 0.03661938295480027 2201 23 0.06761378711368593 2201 24 0.17742171734360568 2201 25 0.05009366547482941 2201 26 0.21337330795877918 2201 27 0.2370782744650768 2201 28 0.14861013032858494 2201 29 0.1250040732761093 2201 30 0.04917739814777278 2201 31 0.10276951622222441 2201 32 0.09687483211854442 2201 33 0.06445538455309574 2201 34 -0.030053057763499424 2201 35 0.029260358057289437 2201 36 0.21666629769518408 2201 37 0.1411455764384364 2201 38 -0.011880589486128912 2201 39 0.014136342480117747 2201 40 0.20862650564731666 2201 41 0.1923803109023332 2201 42 0.2242410684104037 2201 43 0.18257490975146595 2201 44 0.16401094881630485 2201 45 0.29039996626220344 2201 46 0.18035469542967064 2201 47 0.2456700489134036 2201 48 0.31402393199275735 2201 49 0.18095848070094434 2201 50 0.1319831294145608 2201 51 0.19722902235649187 1101 1 -0.13243314792847727 1101 2 -0.2013853504976275 1101 3 -0.14886432566259344 1101 4 -0.1790717150247687 1101 5 -0.19487713119026395 1101 6 -0.2405818962806734 1101 7 -0.2313321695328341 1101 8 -0.17163577862555002 1101 9 -0.3512054914071854 1101 10 -0.16041325105473447 1101 11 -0.11525847898676389 1101 12 -0.14710922864489007 1101 13 -0.22151469347434372 1101 14 -0.17850336536528744 1101 15 -0.21537982083697926 1101 16 -0.20127689080802114 1101 17 -0.21100132595297794 1101 18 -0.13098904633605812 1101 19 -0.20659402701510743 1101 20 -0.2081534311792197 1101 21 -0.20951457708178722 1101 22 -0.3073259568075599 1101 23 -0.29355273141147364 1101 24 -0.2544638070013825 1101 25 -0.13100064581905002 1101 26 -0.10813347557212794 1101 27 -0.11251783803182391 1101 28 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2.7073576516529556 1213 51 2.3178654974091515 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 614.0 3 136.0 4 99.0 5 22.0 6 5841.0 7 37638.0 8 127161.0 9 190439.0 10 170595.0 11 139686.0 12 113470.0 13 80665.0 14 54994.0 15 37850.0 16 27376.0 17 20902.0 18 17447.0 19 15070.0 20 13633.0 21 12864.0 22 12480.0 23 12304.0 24 12384.0 25 12878.0 26 13658.0 27 14671.0 28 16474.0 29 20618.0 30 19996.0 31 23546.0 32 30410.0 33 34966.0 34 46819.0 35 69736.0 36 116544.0 37 296808.0 38 1513992.0 39 98343.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.729326894639474 31.988202656267163 20.6246345017525 26.657835947340864 2 22.24694175859042 36.85852827403801 22.40377614549849 18.490753821873078 3 21.652432442668584 35.102426688769405 23.069144387908946 20.175996480653062 4 22.612505054672035 33.39410593194168 22.81128330985169 21.1821057035346 5 24.106575784025928 32.04554115298513 21.286284979775154 22.561598083213788 6 20.929362647261296 32.77823240708398 22.352486709011767 23.939918236642953 7 19.950750971928287 42.01157107429541 20.93951902368988 17.098158930086424 8 31.539993817544133 30.84407420928225 21.202327423678575 16.413604549495044 9 18.083691789897642 43.69572893807898 20.982557509407666 17.23802176261571 10 20.52420500284799 31.062205640914332 30.829355130534097 17.584234225703586 11 18.600379967037668 32.90257583389829 20.498088365497875 27.998955833566164 12 32.406989533181346 29.47986393864128 21.00260031611686 17.110546212060516 13 30.321909969629374 30.571453711019895 20.323290982278753 18.783345337071975 14 19.490904196149337 43.38251789937889 20.148724944220135 16.97785296025164 15 18.33244858608455 42.95399333729964 21.47272832160436 17.240829755011447 16 29.98282162400917 30.748156733451392 20.95709426721232 18.31192737532712 17 19.445124282091445 41.90327930372194 20.135878179309316 18.515718234877305 18 31.293897863708924 29.718258277279354 21.581367595724913 17.40647626328681 19 20.18455784812262 31.762456940921034 20.491853191667275 27.56113201928907 20 19.25543293468358 42.32172133714861 20.978862054869676 17.44398367329814 21 18.507843975912742 33.19465600369211 21.267628696330153 27.029871324064995 22 20.430987237680178 41.43705533426976 19.947858713896835 18.18409871415323 23 20.378207940944925 31.287406917923445 20.139467965896955 28.194917175234675 24 31.54222408172922 29.174013726424825 21.696299645826073 17.587462546019886 25 19.585599534284594 31.912576967308144 28.88869011424071 19.613133384166552 26 19.230420714802886 32.937020251243034 22.002543606239264 25.83001542771482 27 20.138489683928736 33.39885069762008 28.678104137645903 17.784555480805288 28 29.39813587322306 30.69836284333235 20.778253990915367 19.125247292529217 29 19.701275627193567 39.84576629409643 21.254392962635563 19.19856511607444 30 21.0575509970992 37.005136130175906 22.781307143381593 19.156005729343306 31 20.41868326505234 34.70982107087092 22.15031375459225 22.72118190948449 32 26.537597201992803 32.18733874936374 23.022897845290878 18.252166203352584 33 23.04306655050945 35.907934722752344 21.641895848933462 19.407102877804743 34 22.13947213922448 35.463200234255154 23.631654164803162 18.7656734617172 35 22.42255658332049 34.92273504283465 21.730425030833434 20.924283343011425 36 25.575850565995072 33.081699031233676 21.77085904040591 19.57159136236534 37 25.356160136869914 32.834648927032624 22.360703043327767 19.44848789276969 38 24.903005913463446 34.082043769419215 20.707727593754154 20.307222723363193 39 22.136435523327027 35.083370336313386 22.47665898636309 20.303535153996496 40 25.57688133430258 33.28510389093891 21.185360431559303 19.952654343199196 41 24.008381874080754 35.01364152337531 22.175429640973285 18.802546961570645 42 27.282249436510398 31.38316593749053 21.222347053654467 20.112237572344608 43 24.021687635809947 31.665416734407753 23.248419520387298 21.064476109395002 44 27.58176215065581 30.02268819738819 22.516120216270647 19.879429435685356 45 25.397293433928752 30.178712845612214 24.987806292244567 19.436187428214463 46 22.821980319584586 31.713713560303287 24.058612942409454 21.405693177702677 47 24.99793860570495 32.90145544634941 21.45003864932201 20.650567298623628 48 27.62831070956253 30.46256333844868 22.841816385439245 19.067309566549547 49 27.424277034925392 30.743133390596356 22.398893277499944 19.433696296978304 50 24.361774813636412 31.26421309185099 24.310203415658183 20.063808678854418 51 24.015943498479075 35.49776814330502 21.7541344708227 18.732153887393217 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5344.0 1 5547.5 2 5751.0 3 5558.0 4 5365.0 5 5022.0 6 4679.0 7 4528.5 8 4378.0 9 4302.0 10 4226.0 11 4561.0 12 4896.0 13 5246.5 14 5597.0 15 6430.5 16 7264.0 17 8307.5 18 9351.0 19 11027.5 20 12704.0 21 15262.0 22 17820.0 23 21333.0 24 24846.0 25 30941.5 26 45477.5 27 53918.0 28 60807.5 29 67697.0 30 81498.5 31 95300.0 32 107527.5 33 119755.0 34 141911.0 35 164067.0 36 186230.5 37 208394.0 38 232846.0 39 257298.0 40 270565.5 41 283833.0 42 305641.5 43 327450.0 44 332740.0 45 338030.0 46 322709.0 47 307388.0 48 277754.5 49 248121.0 50 228195.5 51 208270.0 52 187856.0 53 167442.0 54 149609.0 55 131776.0 56 123597.5 57 115419.0 58 87858.0 59 60297.0 60 52341.5 61 44386.0 62 34140.5 63 23895.0 64 19977.0 65 16059.0 66 13568.5 67 11078.0 68 9237.5 69 7397.0 70 6655.5 71 5914.0 72 5142.0 73 4370.0 74 3687.0 75 2519.0 76 2034.0 77 1731.5 78 1429.0 79 1312.0 80 1195.0 81 1070.0 82 945.0 83 845.5 84 746.0 85 689.0 86 632.0 87 535.0 88 438.0 89 373.5 90 309.0 91 281.0 92 253.0 93 210.5 94 168.0 95 164.0 96 160.0 97 197.5 98 235.0 99 2502.0 100 4769.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03407969814125831 2 0.024642243271371392 3 0.019632236365135128 4 0.01925357305245448 5 0.020884738091694194 6 0.01572909144981153 7 0.022632414919451033 8 0.024350963800078586 9 0.023914044593139377 10 0.025749105262284053 11 0.02114688961585772 12 0.024875266848405637 13 0.025195674266827724 14 0.025836489103671898 15 0.025836489103671898 16 0.02641904804625751 17 0.027292886460135928 18 0.025399569896732692 19 0.02697247904171384 20 0.027962829244109384 21 0.02740939824865305 22 0.026681199570421036 23 0.027467654142911614 24 0.026710327517550318 25 0.028836667657987803 26 0.028953179446504922 27 0.027962829244109384 28 0.027933701296980102 29 0.027234630565877365 30 0.028341492556790034 31 0.02877841176372924 32 0.028312364609660752 33 0.029098819182151327 34 0.028370620503919308 35 0.028487132292436435 36 0.030060041437417584 37 0.028108468979755784 38 0.027991957191238665 39 0.028341492556790034 40 0.026914223147455278 41 0.027991957191238665 42 0.027525910037170177 43 0.027467654142911614 44 0.027613293878558015 45 0.030030913490288302 46 0.028720155869470677 47 0.028720155869470677 48 0.028312364609660752 49 0.02950661044196125 50 0.028953179446504922 51 0.029390098653444132 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3433129.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.90195107449158 #Duplication Level Percentage of deduplicated Percentage of total 1 96.55913588204645 46.25371002816973 2 1.737048942850825 1.6641606694887507 3 0.489052782750346 0.7027974741645311 4 0.1540135736647645 0.2951020268198861 5 0.0806649109730768 0.1932003309430272 6 0.07918525976007301 0.2275877063308755 7 0.030582267795646562 0.10254652069858426 8 0.020839756776847792 0.07986120076230936 9 0.010598910104331893 0.045693762593457664 >10 0.11220509269194279 1.2173322847805874 >50 0.19876619628648534 7.660893728737039 >100 0.5270826255493131 40.52094056957509 >500 6.410187962864651E-4 0.17150998151599622 >1k 1.2185355389214927E-4 0.2712756349897769 >5k 0.0 0.0 >10k+ 6.0926399573620636E-5 0.5933880804303482 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG 20332 0.5922294210325333 Illumina Single End PCR Primer 1 (100% over 51bp) CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC 4740 0.13806646939279008 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4555 0.13267779917387315 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence 1 0.8710421309540073 0.0 0.0 2 0.8745083566623917 0.0 0.0 3 0.8750326597107188 0.0 0.0 4 0.8769259762741219 0.0 0.0 5 0.8833049966954344 0.0 0.0 6 0.9651836560758422 0.0 0.0 7 7.064867064418494 0.0 0.0 8 7.072585970407753 0.0 0.0 9 7.077333825789826 0.0 0.0 10 7.106986075967434 0.0 0.0 11 7.212574884311076 0.0 0.0 12 7.331183885021507 0.0 0.0 13 7.794085220800034 0.0 0.0 14 7.823300551770703 0.0 0.0 15 7.8539431521507055 0.0 0.0 16 7.874507482823978 0.0 0.0 17 7.897372921320463 0.0 0.0 18 7.9107426490528026 0.0 0.0 19 7.924520168044952 0.0 0.0 20 7.937103441204802 0.0 0.0 21 7.947968165484023 0.0 0.0 22 7.959881495859899 0.0 0.0 23 7.970513196562087 0.0 0.0 24 7.9831838535633235 0.0 0.0 25 8.006660978949524 0.0 0.0 26 8.074383456025101 0.0 0.0 27 8.226926515141145 0.0 0.0 28 8.263365576999874 0.0 0.0 29 8.28899817047364 0.0 0.0 30 8.340117717685528 0.0 0.0 31 8.557790866582643 0.0 0.0 32 8.688080174091914 0.0 0.0 33 8.78944543010181 0.0 0.0 34 8.834185956892386 0.0 0.0 35 8.867857863773834 0.0 0.0 36 8.894422551555738 0.0 0.0 37 8.913646996661063 0.0 0.0 38 8.932958825607777 0.0 0.0 39 8.953406644492532 2.9127947129280607E-5 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGTCT 11855 0.0 43.747505 21 ACGTCTG 11450 0.0 43.703197 22 CACACGT 18395 0.0 43.65467 19 GCACACG 20495 0.0 43.583942 18 CGTCTGA 11190 0.0 43.57253 23 ACACGTC 16080 0.0 43.530926 20 AGCACAC 21305 0.0 42.750668 17 AGAGCAC 22320 0.0 42.68159 15 GAGCACA 22775 0.0 41.937565 16 CACGTCA 4200 0.0 41.57156 21 CTGAAAG 7330 0.0 41.163162 26 GTCTGAA 11845 0.0 41.12508 24 ACACGTA 3695 0.0 40.676723 20 GGGCGCC 1295 0.0 40.135265 44 TCTGAAA 7940 0.0 39.36096 25 CACGTAG 2325 0.0 39.193676 21 CACGGCT 335 0.0 38.95535 21 AAGAGCA 26765 0.0 38.636406 14 ACGTATG 1075 0.0 38.30245 22 ACGACTG 925 0.0 37.946068 22 >>END_MODULE