##FastQC 0.11.2 >>Basic Statistics pass #Measure Value Filename lane1_Undetermined_L001_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3240789 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.335127649470547 33.0 27.0 33.0 15.0 33.0 2 28.21265346185759 33.0 27.0 33.0 15.0 33.0 3 28.15024119126546 33.0 27.0 33.0 15.0 33.0 4 31.261961824728484 37.0 33.0 37.0 15.0 37.0 5 31.341664329272902 37.0 33.0 37.0 15.0 37.0 6 30.982317577602245 37.0 33.0 37.0 6.0 37.0 7 31.342648657471994 37.0 33.0 37.0 15.0 37.0 8 31.10346523639768 37.0 33.0 37.0 6.0 37.0 9 31.441847648828727 37.0 33.0 37.0 15.0 37.0 10 31.27891911506735 37.0 33.0 37.0 6.0 37.0 11 31.210941224498107 37.0 33.0 37.0 6.0 37.0 12 31.129927002344182 37.0 33.0 37.0 6.0 37.0 13 31.184450761836082 37.0 33.0 37.0 6.0 37.0 14 32.96780290231792 40.0 33.0 40.0 15.0 40.0 15 33.022771615183835 40.0 33.0 40.0 15.0 40.0 16 32.71523076633499 40.0 33.0 40.0 6.0 40.0 17 32.94039105909086 40.0 33.0 40.0 6.0 40.0 18 32.68277385537905 40.0 33.0 40.0 6.0 40.0 19 32.71152333582964 40.0 33.0 40.0 6.0 40.0 20 32.860289886197464 40.0 33.0 40.0 6.0 40.0 21 32.74876796977526 40.0 33.0 40.0 6.0 40.0 22 32.946427552055994 40.0 33.0 40.0 6.0 40.0 23 32.674596834289424 40.0 33.0 40.0 6.0 40.0 24 32.52423005632271 40.0 33.0 40.0 6.0 40.0 25 32.390789094877825 40.0 33.0 40.0 6.0 40.0 26 32.405605857092205 40.0 33.0 40.0 6.0 40.0 27 32.32519735163258 40.0 33.0 40.0 6.0 40.0 28 32.27235281284897 37.0 33.0 40.0 6.0 40.0 29 32.415116195469686 40.0 33.0 40.0 6.0 40.0 30 32.45596890140025 40.0 33.0 40.0 6.0 40.0 31 32.31856964461432 40.0 33.0 40.0 6.0 40.0 32 32.24134616601081 40.0 33.0 40.0 6.0 40.0 33 32.154198560906 37.0 33.0 40.0 6.0 40.0 34 32.12296604314567 40.0 33.0 40.0 6.0 40.0 35 32.11350507546156 40.0 27.0 40.0 6.0 40.0 36 32.10054588558527 37.0 33.0 40.0 6.0 40.0 37 32.112336841429666 37.0 33.0 40.0 6.0 40.0 38 32.03228812489798 37.0 27.0 40.0 6.0 40.0 39 32.002421323943025 37.0 27.0 40.0 6.0 40.0 40 31.936988184050243 37.0 27.0 40.0 6.0 40.0 41 31.932836108737717 37.0 27.0 40.0 6.0 40.0 42 31.811237633798434 37.0 27.0 40.0 6.0 40.0 43 31.753317787736258 37.0 27.0 40.0 6.0 40.0 44 31.777915192874328 37.0 27.0 40.0 6.0 40.0 45 31.62174303850081 37.0 27.0 40.0 6.0 40.0 46 31.562177914082035 37.0 27.0 40.0 6.0 40.0 47 31.640806606045626 37.0 27.0 40.0 6.0 40.0 48 31.55138177770907 37.0 27.0 40.0 6.0 40.0 49 31.466750843698865 37.0 27.0 40.0 6.0 40.0 50 31.398226172700536 37.0 27.0 40.0 6.0 40.0 51 30.61630393092546 37.0 27.0 40.0 6.0 40.0 >>END_MODULE >>Per tile sequence quality pass #Tile Base Mean 2201 1 -0.22724808569808985 2201 2 -0.26821636438447527 2201 3 -0.498652531053402 2201 4 -0.5147775608613472 2201 5 -0.6210416178009375 2201 6 -0.4851856000708814 2201 7 -0.5756523058298804 2201 8 -0.40043941127122906 2201 9 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34 2.3157426725180983 1213 35 2.2379016045532083 1213 36 2.256811680812852 1213 37 2.1738023721897193 1213 38 2.3608950918625453 1213 39 2.237049045806046 1213 40 2.2486549444124293 1213 41 2.382956571702664 1213 42 2.357263361265762 1213 43 2.2471188853711084 1213 44 2.2796920285454014 1213 45 2.3291080851384436 1213 46 2.3341268727142683 1213 47 2.358485500182546 1213 48 2.368011105446172 1213 49 2.3102848761380947 1213 50 2.3774067534357393 1213 51 1.9595556637618223 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 96.0 3 86.0 4 168.0 5 31.0 6 1485.0 7 16202.0 8 67682.0 9 117076.0 10 115554.0 11 98595.0 12 82741.0 13 58335.0 14 38762.0 15 26913.0 16 20029.0 17 15192.0 18 12886.0 19 11322.0 20 10700.0 21 10399.0 22 10539.0 23 10734.0 24 11613.0 25 12155.0 26 12793.0 27 14325.0 28 16088.0 29 18629.0 30 21796.0 31 26191.0 32 33277.0 33 44199.0 34 62233.0 35 95388.0 36 166131.0 37 405656.0 38 1508713.0 39 66075.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 19.809613399898275 27.84687964485529 25.56796858411231 26.77553837113412 2 22.656028906134992 34.71803834297087 25.147973277626228 17.477959473267905 3 23.2207094999003 31.41950603061951 26.037817852263558 19.321966617216635 4 23.503066695022266 30.59151363028724 25.545379709346882 20.360039965343617 5 24.70243138213505 29.987941391520827 23.8646559315113 21.444971294832822 6 19.227092713132546 30.09722222650905 27.213704633202845 23.461980427155556 7 20.983445565479965 35.618468106040474 24.997785602496666 18.40030072598289 8 26.184716767109332 30.849135369965968 24.884770010725887 18.081377852198806 9 20.10776005099387 36.779175238956604 24.627971619996885 18.485093090052647 10 20.69642863755936 30.853782883976088 28.88114551224998 19.568642966214572 11 20.041317978073202 31.14319450805435 24.129230093116675 24.686257420755773 12 26.925842688306712 29.498797283842865 24.853479729124988 18.721880298725434 13 25.838864449035448 30.24726602500992 24.220484581905673 19.693384944048955 14 20.346369246134255 36.94683478358557 23.994869335328318 18.71192663495185 15 19.946950846508688 36.042128213026245 24.570295066626255 19.440625873838815 16 25.487291215471096 30.450465632284907 24.34186017728996 19.720382974954035 17 20.498792973969536 35.86961587835721 24.039464395895894 19.592126751777357 18 25.7425904517604 29.870236079727285 24.87635579657234 19.51081767193997 19 20.291847798410206 30.84750366121458 24.12457234390263 24.73607619647258 20 20.69648894411533 35.63818328058632 24.18112502677474 19.484202748523607 21 20.145519231641668 30.927928909386566 24.604854118143024 24.321697740828743 22 20.909370935513284 35.14861630751548 23.946080715960782 19.99593204101046 23 21.142182508449466 29.716036236245507 23.959164776147045 25.18261647915799 24 26.298874440491502 29.10570606083798 24.9409630582432 19.65445644042731 25 20.557320850353612 30.6756388083396 27.94291925442836 20.824121086878428 26 20.4701574352086 30.927925736804678 24.9445668062579 23.657350021728824 27 20.81328298215899 31.025289984247767 28.001411034462325 20.160015999130913 28 24.281810833308384 30.195349428655465 24.774621148405135 20.748218589631016 29 20.23048829456625 33.89987811694539 24.845840621162218 21.023792967326145 30 21.391416582410216 32.70199635320798 24.98006239298196 20.926524671399843 31 20.90364113587021 31.61824317547414 25.133697596081888 22.34441809257376 32 23.19947759197304 31.20363389591156 25.19637363407182 20.400514878043587 33 22.186660577437863 31.924510020227142 24.42926594449647 21.459563457838517 34 22.0058093242988 32.282208975196184 25.068944063342123 20.643037637162887 35 22.379393318061304 32.28104891235414 24.575392697140153 20.764165072444403 36 22.484969890403104 31.88617575561 24.865623212951522 20.76323114103537 37 22.690836366890988 30.836397753804228 25.29899124884843 21.17377463045635 38 23.149229411365333 31.129126830803795 24.600478956171806 21.121164801659063 39 22.067387796304075 31.54288433544348 25.348392888609634 21.041334979642816 40 23.188942515561045 31.12353998993304 24.539310058349482 21.148207436156433 41 23.300596339377996 31.610708863986293 24.802107479348166 20.286587317287548 42 23.765921023759905 30.38014178356203 25.020191087775757 20.833746104902307 43 22.812746308877273 30.750673848624622 25.319796490617346 21.11678335188076 44 23.74718168727823 30.181637284618567 25.2905647241371 20.7806163039661 45 23.26878380718037 30.448721410779594 25.674831980608907 20.607662801431122 46 22.758674538053903 30.53388633439487 25.55838900532334 21.149050122227884 47 22.7781163926458 31.459375216992125 24.59818073804325 21.164327652318825 48 24.76089047005946 29.818575489853583 25.01651053155888 20.404023508528073 49 23.010342392699837 31.249074147227873 24.79560256967351 20.944980890398785 50 22.733988133356995 30.903053075836954 25.57136574413419 20.79159304667186 51 22.957745653019902 31.87597153766889 24.47656165856004 20.68972115075117 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3201.0 1 3199.0 2 3197.0 3 3192.0 4 3187.0 5 2981.0 6 2775.0 7 2661.0 8 2547.0 9 2601.0 10 2655.0 11 2786.5 12 2918.0 13 3223.0 14 3528.0 15 4106.0 16 4684.0 17 5665.0 18 6646.0 19 8018.5 20 9391.0 21 11653.5 22 13916.0 23 17202.5 24 20489.0 25 27185.5 26 42210.5 27 50539.0 28 58546.0 29 66553.0 30 80999.5 31 95446.0 32 108809.5 33 122173.0 34 145144.0 35 168115.0 36 192091.5 37 216068.0 38 240793.0 39 265518.0 40 279143.5 41 292769.0 42 311947.5 43 331126.0 44 334809.0 45 338492.0 46 320755.0 47 303018.0 48 269745.0 49 236472.0 50 210727.5 51 184983.0 52 161414.5 53 137846.0 54 118813.0 55 99780.0 56 88310.5 57 76841.0 58 59583.5 59 42326.0 60 37653.0 61 32980.0 62 25296.5 63 17613.0 64 14973.5 65 12334.0 66 10647.5 67 8961.0 68 7404.0 69 5847.0 70 5216.5 71 4586.0 72 4016.0 73 3446.0 74 2901.5 75 1975.5 76 1594.0 77 1286.0 78 978.0 79 860.0 80 742.0 81 649.0 82 556.0 83 512.0 84 468.0 85 391.5 86 315.0 87 298.5 88 282.0 89 254.5 90 227.0 91 206.0 92 185.0 93 179.5 94 174.0 95 205.5 96 237.0 97 378.5 98 520.0 99 2913.0 100 5306.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01990256076529512 2 0.01567519514537972 3 0.03563946927738893 4 0.030301263056619857 5 0.02406821301849642 6 0.027524161554485654 7 0.019439710514939416 8 0.029745842756193016 9 0.03653431309474329 10 0.01410150429417034 11 0.01706374589644682 12 0.01922371373144009 13 0.01959399393172465 14 0.02045798106572196 15 0.023913929601711188 16 0.0242533531186387 17 0.031103536823903065 18 0.013669510727171687 19 0.02295737241764274 20 0.02453106326885212 21 0.016354042179234748 22 0.02576533060313399 23 0.028974425672266844 24 0.01373122409388578 25 0.016570038962734075 26 0.02632075090356083 27 0.018915146897869623 28 0.024685346685637356 29 0.02462363331892326 30 0.0210134013661488 31 0.0140089342440992 32 0.012651240176389146 33 0.0029005282355623893 34 0.01484206469473946 35 0.01363865404381464 36 0.01419407434424148 37 0.01987170408193807 38 0.012620383493032098 39 0.012651240176389146 40 0.014996348111524692 41 0.016045475345664282 42 0.015366628311809252 43 0.01379293746059987 44 0.01157125625889251 45 0.016600895646091123 46 0.016354042179234748 47 0.014317501077669667 48 0.01336094389360122 49 0.01644661222930589 50 0.01894600358122667 51 0.01345351394367236 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3240789.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.28704135659247 #Duplication Level Percentage of deduplicated Percentage of total 1 96.10842124267258 47.368997325044134 2 2.1186840700879013 2.0884733876795214 3 0.4688954183593019 0.6933140362977491 4 0.19627957225723924 0.3869615758118732 5 0.12486434359163176 0.3077097033282264 6 0.054026856413773555 0.15976943438594043 7 0.0397469755084217 0.1371307577978134 8 0.040629982097449245 0.16020252863636741 9 0.03358125012057996 0.14896084171491905 >10 0.13841034776228778 1.2734392058552195 >50 0.1767213039691474 7.013047156961107 >100 0.4987824349541413 39.54445048323036 >500 6.390386019886536E-4 0.1787676189521984 >1k 1.9240878362925554E-4 0.16855695464288167 >5k 1.2475482007160682E-4 0.3702189896617105 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG 6812 0.2101957270282021 Illumina Single End PCR Primer 1 (100% over 51bp) CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC 5230 0.1613804539573542 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence 1 0.2697799825906593 0.0 0.0 2 0.2737604947437183 0.0 0.0 3 0.2778027202634914 0.0 0.0 4 0.2850848975357544 0.0 0.0 5 0.2926139282748738 0.0 0.0 6 0.3710516173684865 0.0 0.0 7 3.2482522003129484 0.0 0.0 8 3.2635571152580436 0.0 0.0 9 3.27247469674823 0.0 0.0 10 3.329868127792337 0.0 0.0 11 3.4815595831755783 0.0 0.0 12 3.596223018530364 0.0 0.0 13 3.6920638770373513 0.0 0.0 14 3.7134784152871414 0.0 0.0 15 3.7656570668439073 0.0 0.0 16 3.7925332380478953 0.0 0.0 17 3.832153219478343 0.0 0.0 18 3.8568694228473377 0.0 0.0 19 3.8719274843255764 0.0 0.0 20 3.883683880684611 0.0 0.0 21 3.8978162416621385 0.0 0.0 22 3.914787417508514 0.0 0.0 23 3.9284877849190427 0.0 0.0 24 3.94366927313071 0.0 0.0 25 3.9815921369765204 0.0 0.0 26 4.0255629107603115 0.0 0.0 27 4.079438679901715 0.0 0.0 28 4.105882857538704 0.0 0.0 29 4.13100019779134 0.0 0.0 30 4.1548832707096945 0.0 0.0 31 4.232580399402738 0.0 0.0 32 4.290837817580842 0.0 0.0 33 4.338881673567764 0.0 0.0 34 4.374243432694939 0.0 0.0 35 4.405439539568913 0.0 0.0 36 4.419942180746726 0.0 0.0 37 4.432809417706614 0.0 0.0 38 4.447157775467641 0.0 0.0 39 4.462740400562949 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGTCT 5425 0.0 41.309395 21 ACGTCTG 4765 0.0 41.27095 22 CGTCTGA 4670 0.0 41.243244 23 CACACGT 8215 0.0 41.166187 19 ACACGTC 7145 0.0 41.15879 20 GCACACG 9915 0.0 41.12015 18 AGCACAC 10540 0.0 39.813847 17 AGAGCAC 11180 0.0 39.408836 15 GGGCGCC 1090 0.0 39.007744 44 GAGCACA 11610 0.0 37.696705 16 CTCGGTG 1290 0.0 37.49479 38 AGGGCGC 1000 0.0 36.668774 43 CACGTCA 1850 0.0 36.48705 21 CGTCTAG 715 0.0 36.18993 23 TCTCGGT 1355 0.0 35.366276 37 CACGTAG 1185 0.0 35.317 21 GTCTGAG 645 0.0 35.230927 24 ACACGTA 1785 0.0 35.16861 20 GTCTGAA 4975 0.0 34.95818 24 AAGAGCA 13565 0.0 34.86869 14 >>END_MODULE