| Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
|---|
| 1 | SV25b | CAGATC | N | lane1 | 1,285 | 100.00 | 25,193,991 | 20.26 | 99.08 | 0.92 | 98.04 | 38.04 | ||
| 1 | SV66 | TGACCA | N | lane1 | 1,163 | 100.00 | 22,813,030 | 18.34 | 98.83 | 1.17 | 97.16 | 37.67 | ||
| 1 | SV6 | CGATGT | N | lane1 | 1,239 | 100.00 | 24,284,623 | 19.52 | 99.20 | 0.80 | 97.88 | 37.97 | ||
| 1 | SV8 | ACAGTG | N | lane1 | 1,526 | 100.00 | 29,913,207 | 24.05 | 99.15 | 0.85 | 97.80 | 37.94 | ||
| 1 | SV9 | GCCAAT | N | lane1 | 908 | 100.00 | 17,811,124 | 14.32 | 98.86 | 1.14 | 97.79 | 37.94 | ||
| 1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 223 | 100.00 | 4,365,636 | 3.51 | 0.00 | 0.00 | 98.05 | 38.01 |
| 2 | SV11 | CGATGT | N | lane2 | 1,197 | 100.00 | 23,479,319 | 17.78 | 99.06 | 0.94 | 97.85 | 37.96 | ||
| 2 | SV13 | ACAGTG | N | lane2 | 1,469 | 100.00 | 28,804,005 | 21.81 | 99.14 | 0.86 | 97.65 | 37.88 | ||
| 2 | SV14 | GCCAAT | N | lane2 | 823 | 100.00 | 16,134,327 | 12.22 | 98.68 | 1.32 | 97.58 | 37.88 | ||
| 2 | SV67 | TGACCA | N | lane2 | 1,426 | 100.00 | 27,959,871 | 21.17 | 98.81 | 1.19 | 97.13 | 37.66 | ||
| 2 | SV68 | CTTGTA | N | lane2 | 1,582 | 100.00 | 31,027,558 | 23.50 | 99.19 | 0.81 | 97.25 | 37.71 | ||
| 2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 237 | 100.00 | 4,641,352 | 3.51 | 0.00 | 0.00 | 97.99 | 37.98 |
| SampleID | Recipe | Operator | Directory |
|---|
| SV25b | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV25b | ||
| SV66 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV66 | ||
| SV6 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV6 | ||
| SV8 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV8 | ||
| SV9 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV9 | ||
| lane1 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane1 | ||
| SV11 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV11 | ||
| SV13 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV13 | ||
| SV14 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV14 | ||
| SV67 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV67 | ||
| SV68 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV68 | ||
| lane2 | /export/data1/gencore/demux/HAMDJADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4