FastQCFastQC Report
Mon 29 Sep 2014
Complete_Undetermined_L002_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameComplete_Undetermined_L002_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128280483
Sequences flagged as poor quality0
Sequence length7
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGA9518660.742019345218711No Hit
NNNNNNN2771390.2160414378857616No Hit
TGGGGGA2722580.21223649430755573No Hit
GGGGAGA2184830.17031663343518905No Hit
GGGAGGA2106320.1641964506790951No Hit
GGGGGAA1839070.1433631957871565No Hit
AGGGGGA1828190.14251505429707495No Hit
CGGGGGA1823710.1421658195658649No Hit
GGGGGTA1734090.13517956585804247No Hit
GGGGTGA1705200.1329274695668241No Hit
GTGGGGA1668520.13006811020504186No Hit
GGAGGGA1596130.12442500703711881No Hit
GCGGGGA1571630.12251512960081386No Hit
GGGCGGA1513010.11794545550627526No Hit
GGGTGGA1452410.11322143213321079No Hit
GGGGCGA1440510.11229377737843409No Hit
GAGGGGA1372690.10700692481801773No Hit
GGTGGGA1350690.10529193283439695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)