SV64_GCCAAT_L002_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV64_GCCAAT_L002_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20181654
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	935709	4.636433663960347	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	101295	44.00229	2
GATCGGA	101395	43.95122	1
ACACGTC	100810	43.626385	13
CGTCTGA	101030	43.39554	16
ACGTCTG	101190	43.35805	15
TCGGAAG	102735	43.352455	3
TATCTCG	99820	43.311485	39
CTCGTAT	99905	43.249	42
CGCCAAT	99990	43.23035	33
TCGTATG	100175	43.218002	43
CACGTCT	101785	43.162067	14
TCTCGTA	100145	43.14536	41
CGGAAGA	103025	43.120052	4
CGTATGC	100430	43.10005	44
ATCTCGT	100305	43.094376	40
CACACGT	102240	43.071213	12
GTATGCC	100440	43.06675	45
ACGCCAA	100905	42.929764	32
GCCAATA	100880	42.831112	34
AGTCACG	101315	42.78046	28