SV55_CAGATC_L001_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV55_CAGATC_L001_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18638603
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	249046	1.3361838330909241	TruSeq Adapter, Index 7 (100% over 51bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	135829	0.7287509691579352	No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	105742	0.5673279268837905	No Hit
TCTTCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	23893	0.1281909379152504	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	27420	44.274635	1
ATCGGAA	27640	43.854523	2
ACACGTC	27740	43.255394	13
CGGAAGA	28125	43.074276	4
TCGGAAG	28125	43.066277	3
CGTCTGA	27885	42.99013	16
ACGTCTG	27945	42.93003	15
TAAGCCG	15095	42.80815	16
TCTCGTA	27475	42.715614	41
CTCGTAT	27510	42.710346	42
AGCCGAT	15205	42.48366	18
TCGTATG	27790	42.393368	43
GGCGGTC	14240	42.32899	38
CGTATGC	27925	42.244934	44
AATTCGG	14275	42.240967	23
CCGATGA	15280	42.23096	20
TATTCGT	11525	42.162197	1
CACGTCT	28510	42.11872	14
GCGGTCT	14325	42.109234	39
CGATGAC	15365	42.026623	21