SV54_GCCAAT_L001_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV54_GCCAAT_L001_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	30232179
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	524778	1.735825922438472	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	59040	43.098007	1
ATCGGAA	59200	42.949627	2
CGCCAAT	57715	42.738182	33
CTCGTAT	57575	42.66006	42
TCTCGTA	57465	42.65152	41
TATCTCG	57635	42.567253	39
CGTCTGA	59040	42.506847	16
ACACGTC	59110	42.50219	13
TCGTATG	57920	42.4448	43
CGTATGC	58100	42.38385	44
GTCACGC	58335	42.287735	29
ACGTCTG	59415	42.2575	15
ACGCCAA	58490	42.214214	32
ATCTCGT	58235	42.095295	40
TCGGAAG	60440	42.068462	3
TCACGCC	59135	41.71946	30
CGGAAGA	60970	41.67686	4
AGTCACG	59175	41.657036	28
CACGTCT	60465	41.54973	14
CACGCCA	59720	41.34853	31