| Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
|---|
| 1 | SV51 | CGATGT | N | lane1 | 1,627 | 100.00 | 31,897,461 | 22.51 | 96.50 | 3.50 | 97.49 | 37.79 | ||
| 1 | SV52 | TGACCA | N | lane1 | 1,635 | 100.00 | 32,064,893 | 22.63 | 96.78 | 3.22 | 96.81 | 37.54 | ||
| 1 | SV53 | ACAGTG | N | lane1 | 1,226 | 100.00 | 24,045,100 | 16.97 | 96.93 | 3.07 | 97.09 | 37.65 | ||
| 1 | SV54 | GCCAAT | N | lane1 | 1,542 | 100.00 | 30,232,179 | 21.34 | 98.65 | 1.35 | 97.25 | 37.71 | ||
| 1 | SV55 | CAGATC | N | lane1 | 951 | 100.00 | 18,638,603 | 13.15 | 95.43 | 4.57 | 97.60 | 37.84 | ||
| 1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 245 | 100.00 | 4,810,677 | 3.40 | 0.00 | 0.00 | 96.12 | 37.43 |
| 2 | SV60 | CAGATC | N | lane2 | 811 | 100.00 | 15,893,026 | 12.68 | 98.99 | 1.01 | 98.24 | 38.09 | ||
| 2 | SV61 | CGATGT | N | lane2 | 1,052 | 100.00 | 20,618,658 | 16.45 | 99.23 | 0.77 | 97.60 | 37.81 | ||
| 2 | SV62 | TGACCA | N | lane2 | 1,172 | 100.00 | 22,986,449 | 18.34 | 98.87 | 1.13 | 97.72 | 37.87 | ||
| 2 | SV63 | ACAGTG | N | lane2 | 1,078 | 100.00 | 21,143,830 | 16.87 | 99.17 | 0.83 | 97.32 | 37.69 | ||
| 2 | SV64 | GCCAAT | N | lane2 | 1,029 | 100.00 | 20,181,654 | 16.10 | 98.93 | 1.07 | 97.38 | 37.73 | ||
| 2 | SV65 | CTTGTA | N | lane2 | 1,059 | 100.00 | 20,767,563 | 16.57 | 99.09 | 0.91 | 97.56 | 37.79 | ||
| 2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 192 | 100.00 | 3,758,919 | 3.00 | 0.00 | 0.00 | 97.95 | 37.95 |
| SampleID | Recipe | Operator | Directory |
|---|
| SV51 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV51 | ||
| SV52 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV52 | ||
| SV53 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV53 | ||
| SV54 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV54 | ||
| SV55 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV55 | ||
| lane1 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane1 | ||
| SV60 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV60 | ||
| SV61 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV61 | ||
| SV62 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV62 | ||
| SV63 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV63 | ||
| SV64 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV64 | ||
| SV65 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV65 | ||
| lane2 | /export/data1/demux/HABDFADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4