Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
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1 | brugia_1 | ATCACG | N | lane1 | 4,550 | 100.00 | 45,049,984 | 14.16 | 94.68 | 5.32 | 88.27 | 34.91 | ||
1 | brugia_2 | CGATGT | N | lane1 | 9,927 | 100.00 | 98,287,610 | 30.88 | 95.24 | 4.76 | 86.70 | 34.48 | ||
1 | brugia_4 | TTAGGC | N | lane1 | 8,022 | 100.00 | 79,422,728 | 24.96 | 95.49 | 4.51 | 89.18 | 35.13 | ||
1 | brugia_8 | TGACCA | N | lane1 | 8,730 | 100.00 | 86,433,534 | 27.16 | 95.94 | 4.06 | 90.78 | 35.52 | ||
1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 915 | 100.00 | 9,056,196 | 2.85 | 0.00 | 0.00 | 80.76 | 33.09 |
2 | brugia_1 | ATCACG | N | lane2 | 4,502 | 100.00 | 44,573,988 | 14.17 | 94.90 | 5.10 | 88.56 | 34.98 | ||
2 | brugia_2 | CGATGT | N | lane2 | 9,805 | 100.00 | 97,078,986 | 30.87 | 95.11 | 4.89 | 86.97 | 34.54 | ||
2 | brugia_4 | TTAGGC | N | lane2 | 7,937 | 100.00 | 78,583,692 | 24.99 | 95.38 | 4.62 | 89.63 | 35.24 | ||
2 | brugia_8 | TGACCA | N | lane2 | 8,602 | 100.00 | 85,169,070 | 27.08 | 95.80 | 4.20 | 91.32 | 35.65 | ||
2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 915 | 100.00 | 9,061,274 | 2.88 | 0.00 | 0.00 | 81.41 | 33.22 |
SampleID | Recipe | Operator | Directory |
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brugia_1 | /export/data1/demux/HAAULADXX/bcl2fastq/Unaligned/Project_lane1/Sample_brugia_1 | ||
brugia_2 | /export/data1/demux/HAAULADXX/bcl2fastq/Unaligned/Project_lane1/Sample_brugia_2 | ||
brugia_4 | /export/data1/demux/HAAULADXX/bcl2fastq/Unaligned/Project_lane1/Sample_brugia_4 | ||
brugia_8 | /export/data1/demux/HAAULADXX/bcl2fastq/Unaligned/Project_lane1/Sample_brugia_8 | ||
lane1 | /export/data1/demux/HAAULADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane1 | ||
lane2 | /export/data1/demux/HAAULADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4