FastQCFastQC Report
Tue 12 Aug 2014
SV36_CGATGT_L002_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SV36_CGATGT_L002_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 29611258
Filtered Sequences 0
Sequence length 51
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC 33630 0.11357166926173823 TruSeq Adapter, Index 2 (100% over 51bp)

[OK] Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.10.1)