FastQCFastQC Report
Tue 12 Aug 2014
SV31_CGATGT_L001_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SV31_CGATGT_L001_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 21017840
Filtered Sequences 0
Sequence length 51
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GTGTG 2572050 3.1259625 3.7439296 4
CACAC 2763880 3.1224473 3.7259095 12
ACACA 3140730 3.006174 3.2755628 8