| Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
|---|
| 1 | SV31 | CGATGT | N | lane1 | 1,072 | 100.00 | 21,017,840 | 14.85 | 96.46 | 3.54 | 97.36 | 38.31 | ||
| 1 | SV32 | TGACCA | N | lane1 | 1,599 | 100.00 | 31,356,637 | 22.16 | 96.36 | 3.64 | 96.00 | 37.70 | ||
| 1 | SV33 | ACAGTG | N | lane1 | 1,353 | 100.00 | 26,524,278 | 18.74 | 96.91 | 3.09 | 97.04 | 38.17 | ||
| 1 | SV34 | GCCAAT | N | lane1 | 1,455 | 100.00 | 28,532,577 | 20.16 | 98.81 | 1.19 | 97.07 | 38.20 | ||
| 1 | SV35 | CAGATC | N | lane1 | 1,498 | 100.00 | 29,368,635 | 20.75 | 95.57 | 4.43 | 97.49 | 38.37 | ||
| 1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 240 | 100.00 | 4,707,422 | 3.33 | 0.00 | 0.00 | 94.99 | 37.55 |
| 2 | SV36 | CGATGT | N | lane2 | 1,510 | 100.00 | 29,611,258 | 23.53 | 97.10 | 2.90 | 97.93 | 38.59 | ||
| 2 | SV37 | TGACCA | N | lane2 | 935 | 100.00 | 18,341,618 | 14.57 | 97.33 | 2.67 | 96.50 | 37.88 | ||
| 2 | SV38 | ACAGTG | N | lane2 | 1,155 | 100.00 | 22,649,290 | 18.00 | 97.37 | 2.63 | 97.72 | 38.49 | ||
| 2 | SV39 | GCCAAT | N | lane2 | 1,377 | 100.00 | 26,997,017 | 21.45 | 98.98 | 1.02 | 97.78 | 38.53 | ||
| 2 | SV40 | CAGATC | N | lane2 | 1,249 | 100.00 | 24,496,430 | 19.47 | 95.94 | 4.06 | 98.01 | 38.63 | ||
| 2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 191 | 100.00 | 3,750,802 | 2.98 | 0.00 | 0.00 | 95.32 | 37.70 |
| SampleID | Recipe | Operator | Directory |
|---|
| SV31 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV31 | ||
| SV32 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV32 | ||
| SV33 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV33 | ||
| SV34 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV34 | ||
| SV35 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane1/Sample_SV35 | ||
| lane1 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane1 | ||
| SV36 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV36 | ||
| SV37 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV37 | ||
| SV38 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV38 | ||
| SV39 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV39 | ||
| SV40 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Project_lane2/Sample_SV40 | ||
| lane2 | /media/demux/manual/H9KMLADXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4