FastQCFastQC Report
Mon 6 Feb 2017
H7V7CAFXX_n01_vs45_170203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7V7CAFXX_n01_vs45_170203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9493485
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTACG5750.09.78197833
TGGGGGG9100.08.1627275
GCACACG7109.3568815E-96.971417411
CGTACGT8702.6375346E-106.723704334
ACACGTC9402.247718E-65.26561813
CACACGT10709.452924E-75.046403412
ACGTCTG11154.1356543E-75.044464615
Produced by FastQC (version 0.11.2)