FastQCFastQC Report
Mon 6 Feb 2017
H7V7CAFXX_n01_vs40_170203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7V7CAFXX_n01_vs40_170203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9035719
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG8700.08.79251711
CGATCAG9200.08.07011333
ACACGTC10150.07.314782613
TGGGGGG9001.0913936E-117.00259355
AGTCACG11000.06.954273728
ACGTCTG12050.06.53479715
CGTCTGA12850.06.30308116
CGTATGC12601.8189894E-126.071023544
GAGCACA15300.06.02910959
GTCACGA11206.548362E-116.0265529
CACACGT12353.6379788E-126.011744512
CACGTCT13500.05.999599514
GTATGCC12901.8189894E-125.929836345
GATCGGA11451.1641532E-105.89790341
CACGATC12553.6379788E-115.736700531
GATCTCG12604.0017767E-115.71393639
CAGTCAC15050.05.680809527
AGCACAC16101.8189894E-125.310292210
TCCAGTC16301.8189894E-125.24516525
CTATATG30250.05.20900251
Produced by FastQC (version 0.11.2)