FastQCFastQC Report
Mon 6 Feb 2017
H7V7CAFXX_n01_vs35_170203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7V7CAFXX_n01_vs35_170203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7121454
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCGC11300.021.30433833
ACGTCCG11500.020.7378932
GCACACG13650.018.79061311
AGTCACG13450.017.89855828
GTCCGCA13800.017.6078934
ACACGTC15850.016.75002313
CACGTCC14750.016.62612531
ACGTCTG15850.016.6078415
CCGCACA14300.016.36288836
CACGTCT16550.016.0414514
GATCGGA16350.015.9701981
CACACGT16300.015.873507512
GTCACGT15850.015.33031429
CATCTCG15600.015.28754841
TCCGCAC16400.014.95358535
CGTCTGA18000.014.74932516
TCACGTC16400.014.67930
TCCAGTC18800.014.00192225
GAGCACA18850.013.84571559
AGCACAC19200.013.71050410
Produced by FastQC (version 0.11.2)