FastQCFastQC Report
Mon 6 Feb 2017
H7V7CAFXX_n01_vs29_170203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7V7CAFXX_n01_vs29_170203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10183390
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGGG3003.2086566E-59.0034875
TAGGGGG6454.3468262E-66.28147174
GCACACG10654.5311026E-95.703857411
CGTCTGA15703.6379788E-125.302180316
Produced by FastQC (version 0.11.2)