H7TFNBGXC_n01_0822-2G-ABF3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H7TFNBGXC_n01_0822-2G-ABF3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26463950
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	194583	0.7352757241454885	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGATCCAATCTCGTAT	64464	0.24359175406543618	TruSeq Adapter, Index 19 (97% over 37bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	53108	0.2006805484442043	No Hit
CTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGAC	40573	0.15331422557857008	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	38334	0.1448536594121437	No Hit
TGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTG	33658	0.12718433945045998	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	28951	0.10939787900143402	No Hit
CCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTA	28281	0.10686613298468293	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	11515	50.20368	11
TATGCCG	10350	50.196304	48
GTATGCC	10540	49.85657	47
CGTATGC	10510	49.66578	46
ACGTCTG	12210	47.432217	15
AGTCACG	12405	45.46291	28
CACACGT	12865	45.098713	12
GTCACGT	12550	44.829456	29
ACACGTC	13205	44.06994	13
AGCACAC	13250	43.86786	10
CACGTCT	13300	43.597534	14
TACTCTA	43105	43.523106	4
TCGTATG	12045	43.424038	45
CTCGTAT	11065	42.93501	44
GTACTCT	43945	42.595287	3
ACTCTAG	50460	41.617706	5
CACGTGA	13550	41.4947	31
TCACGTG	13580	41.35179	30
ACGTGAT	13880	40.50739	32
TTGTACT	45870	40.35821	1