[2023-03-03 05:27:33,147] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-03-03 05:27:33,147] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-03-03 05:27:33,147] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-03-03 05:27:33,149] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-03-03 05:27:33,149] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-03-03 05:27:33,150] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7NTWBGXN/merged [2023-03-03 05:27:33,827] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-03-03 05:27:33,827] multiqc [INFO ] This is MultiQC v1.9 [2023-03-03 05:27:33,827] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7NTWBGXN/merged [2023-03-03 05:27:33,827] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H7NTWBGXN/merged [2023-03-03 05:27:33,827] multiqc [INFO ] Template : default [2023-03-03 05:27:33,827] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-03-03 05:27:33,827] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H7NTWBGXN/merged [2023-03-03 05:27:33,827] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-03-03 05:27:33,828] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-30721269/tmpvz2p8l9c [2023-03-03 05:27:33,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_EriAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:33,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_EriAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:33,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CviAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:33,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CviAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:34,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_VxC-input_z1_fastqc.html [2023-03-03 05:27:34,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_VxC-input_z1_fastqc.html [2023-03-03 05:27:34,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_KyoAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_KyoAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CxV-input_z1_fastqc.html [2023-03-03 05:27:34,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CxV-input_z1_fastqc.html [2023-03-03 05:27:34,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1b2021_z_fastqc.html [2023-03-03 05:27:34,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1b2021_z_fastqc.html [2023-03-03 05:27:34,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_EriAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_EriAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_KyoAmpRb-input_z_fastqc.html [2023-03-03 05:27:34,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_KyoAmpRb-input_z_fastqc.html [2023-03-03 05:27:34,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_C24AmpRb-input_z_fastqc.html [2023-03-03 05:27:34,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_C24AmpRb-input_z_fastqc.html [2023-03-03 05:27:34,319] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CxV-input_z2_fastqc.html [2023-03-03 05:27:34,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CxV-input_z2_fastqc.html [2023-03-03 05:27:34,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_EriAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_EriAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ColAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ColAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_C24AmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_C24AmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ShaAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:34,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ShaAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:34,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_VxC-input_z2_fastqc.html [2023-03-03 05:27:34,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_VxC-input_z2_fastqc.html [2023-03-03 05:27:34,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CviAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CviAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_ColAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_ColAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:34,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_KyoAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_KyoAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_VxC-input_z3_fastqc.html [2023-03-03 05:27:34,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_VxC-input_z3_fastqc.html [2023-03-03 05:27:34,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_EriAmpRb-input_z_fastqc.html [2023-03-03 05:27:34,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_EriAmpRb-input_z_fastqc.html [2023-03-03 05:27:34,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_C24AmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_C24AmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:34,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_C24AmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:34,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_C24AmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:34,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CxV-input_z3_fastqc.html [2023-03-03 05:27:34,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CxV-input_z3_fastqc.html [2023-03-03 05:27:34,921] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ColAmpRb-input_z_fastqc.html [2023-03-03 05:27:34,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ColAmpRb-input_z_fastqc.html [2023-03-03 05:27:34,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_KyoAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:34,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_KyoAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:35,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_undetermined_fastqc.html [2023-03-03 05:27:35,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_undetermined_fastqc.html [2023-03-03 05:27:35,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1b2018_z_fastqc.html [2023-03-03 05:27:35,054] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1b2018_z_fastqc.html [2023-03-03 05:27:35,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_CviAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:35,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_CviAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:35,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_ShaAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:35,139] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_DEL2_ShaAmpPoolRb1-B_z_fastqc.html [2023-03-03 05:27:35,180] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ShaAmpRb-input_z_fastqc.html [2023-03-03 05:27:35,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ShaAmpRb-input_z_fastqc.html [2023-03-03 05:27:35,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CviAmpRb-input_z_fastqc.html [2023-03-03 05:27:35,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_CviAmpRb-input_z_fastqc.html [2023-03-03 05:27:35,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1a2019_z_fastqc.html [2023-03-03 05:27:35,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1a2019_z_fastqc.html [2023-03-03 05:27:35,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ShaAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:35,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ShaAmpPoolIDT1-input_z_fastqc.html [2023-03-03 05:27:35,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ColAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:35,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_ColAmpPoolRb1-input_z_fastqc.html [2023-03-03 05:27:35,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1b2019_z_fastqc.html [2023-03-03 05:27:35,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NTWBGXN_n01_daplib_F1b2019_z_fastqc.html [2023-03-03 05:27:35,744] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-03-03 05:27:35,745] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-03-03 05:27:35,768] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 35 samples (table) [2023-03-03 05:27:35,770] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-03-03 05:27:35,779] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-03-03 05:27:35,783] multiqc [DEBUG ] No samples found: conpair [2023-03-03 05:27:35,787] multiqc [DEBUG ] No samples found: peddy [2023-03-03 05:27:35,790] multiqc [DEBUG ] No samples found: somalier [2023-03-03 05:27:35,793] multiqc [DEBUG ] No samples found: methylQA [2023-03-03 05:27:35,798] multiqc [DEBUG ] No samples found: mosdepth [2023-03-03 05:27:35,801] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-03-03 05:27:35,804] multiqc [DEBUG ] No samples found: qualimap [2023-03-03 05:27:35,807] multiqc [DEBUG ] No samples found: preseq [2023-03-03 05:27:35,810] multiqc [DEBUG ] No samples found: quast [2023-03-03 05:27:35,813] multiqc [DEBUG ] No samples found: qorts [2023-03-03 05:27:35,816] multiqc [DEBUG ] No samples found: rna_seqc [2023-03-03 05:27:35,820] multiqc [DEBUG ] No samples found: rockhopper [2023-03-03 05:27:35,823] multiqc [DEBUG ] No samples found: rsem [2023-03-03 05:27:35,829] multiqc [DEBUG ] No samples found: rseqc [2023-03-03 05:27:35,832] multiqc [DEBUG ] No samples found: busco [2023-03-03 05:27:35,836] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-03-03 05:27:35,839] multiqc [DEBUG ] No samples found: disambiguate [2023-03-03 05:27:35,842] multiqc [DEBUG ] No samples found: supernova [2023-03-03 05:27:35,848] multiqc [DEBUG ] No samples found: deeptools [2023-03-03 05:27:35,851] multiqc [DEBUG ] No samples found: sargasso [2023-03-03 05:27:35,854] multiqc [DEBUG ] No samples found: verifybamid [2023-03-03 05:27:35,858] multiqc [DEBUG ] No samples found: mirtrace [2023-03-03 05:27:35,861] multiqc [DEBUG ] No samples found: happy [2023-03-03 05:27:35,864] multiqc [DEBUG ] No samples found: mirtop [2023-03-03 05:27:35,868] multiqc [DEBUG ] No samples found: homer [2023-03-03 05:27:35,872] multiqc [DEBUG ] No samples found: macs2 [2023-03-03 05:27:35,875] multiqc [DEBUG ] No samples found: theta2 [2023-03-03 05:27:35,878] multiqc [DEBUG ] No samples found: snpeff [2023-03-03 05:27:35,882] multiqc [DEBUG ] No samples found: gatk [2023-03-03 05:27:35,885] multiqc [DEBUG ] No samples found: htseq [2023-03-03 05:27:35,889] multiqc [DEBUG ] No samples found: bcftools [2023-03-03 05:27:35,892] multiqc [DEBUG ] No samples found: featureCounts [2023-03-03 05:27:35,895] multiqc [DEBUG ] No samples found: fgbio [2023-03-03 05:27:35,902] multiqc [DEBUG ] No samples found: dragen [2023-03-03 05:27:35,905] multiqc [DEBUG ] No samples found: dedup [2023-03-03 05:27:35,908] multiqc [DEBUG ] No samples found: damageprofiler [2023-03-03 05:27:35,918] multiqc [DEBUG ] No samples found: biobambam2 [2023-03-03 05:27:35,922] multiqc [DEBUG ] No samples found: mtnucratio [2023-03-03 05:27:35,924] multiqc [DEBUG ] No samples found: picard [2023-03-03 05:27:35,927] multiqc [DEBUG ] No samples found: prokka [2023-03-03 05:27:35,930] multiqc [DEBUG ] No samples found: samblaster [2023-03-03 05:27:35,935] multiqc [DEBUG ] No samples found: samtools [2023-03-03 05:27:35,938] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-03-03 05:27:35,942] multiqc [DEBUG ] No samples found: bamtools [2023-03-03 05:27:35,945] multiqc [DEBUG ] No samples found: jellyfish [2023-03-03 05:27:35,949] multiqc [DEBUG ] No samples found: vcftools [2023-03-03 05:27:35,952] multiqc [DEBUG ] No samples found: longranger [2023-03-03 05:27:35,955] multiqc [DEBUG ] No samples found: stacks [2023-03-03 05:27:35,958] multiqc [DEBUG ] No samples found: varscan2 [2023-03-03 05:27:35,965] multiqc [DEBUG ] No samples found: bbmap [2023-03-03 05:27:35,968] multiqc [DEBUG ] No samples found: bismark [2023-03-03 05:27:35,971] multiqc [DEBUG ] No samples found: biscuit [2023-03-03 05:27:35,974] multiqc [DEBUG ] No samples found: hicexplorer [2023-03-03 05:27:35,977] multiqc [DEBUG ] No samples found: hicup [2023-03-03 05:27:35,980] multiqc [DEBUG ] No samples found: hicpro [2023-03-03 05:27:35,983] multiqc [DEBUG ] No samples found: salmon [2023-03-03 05:27:35,986] multiqc [DEBUG ] No samples found: kallisto [2023-03-03 05:27:35,990] multiqc [DEBUG ] No samples found: slamdunk [2023-03-03 05:27:35,993] multiqc [DEBUG ] No samples found: star [2023-03-03 05:27:35,996] multiqc [DEBUG ] No samples found: hisat2 [2023-03-03 05:27:35,999] multiqc [DEBUG ] No samples found: tophat [2023-03-03 05:27:36,002] multiqc [DEBUG ] No samples found: bowtie2 [2023-03-03 05:27:36,005] multiqc [DEBUG ] No samples found: bowtie1 [2023-03-03 05:27:36,008] multiqc [DEBUG ] No samples found: snpsplit [2023-03-03 05:27:36,011] multiqc [DEBUG ] No samples found: kat [2023-03-03 05:27:36,014] multiqc [DEBUG ] No samples found: leehom [2023-03-03 05:27:36,017] multiqc [DEBUG ] No samples found: adapterRemoval [2023-03-03 05:27:36,020] multiqc [DEBUG ] No samples found: clipandmerge [2023-03-03 05:27:36,023] multiqc [DEBUG ] No samples found: cutadapt [2023-03-03 05:27:36,026] multiqc [DEBUG ] No samples found: flexbar [2023-03-03 05:27:36,029] multiqc [DEBUG ] No samples found: kaiju [2023-03-03 05:27:36,032] multiqc [DEBUG ] No samples found: kraken [2023-03-03 05:27:36,035] multiqc [DEBUG ] No samples found: malt [2023-03-03 05:27:36,038] multiqc [DEBUG ] No samples found: trimmomatic [2023-03-03 05:27:36,041] multiqc [DEBUG ] No samples found: sickle [2023-03-03 05:27:36,044] multiqc [DEBUG ] No samples found: skewer [2023-03-03 05:27:36,047] multiqc [DEBUG ] No samples found: sortmerna [2023-03-03 05:27:36,051] multiqc [DEBUG ] No samples found: biobloomtools [2023-03-03 05:27:36,054] multiqc [DEBUG ] No samples found: fastq_screen [2023-03-03 05:27:36,057] multiqc [DEBUG ] No samples found: afterqc [2023-03-03 05:27:36,060] multiqc [DEBUG ] No samples found: fastp [2023-03-03 05:27:38,463] multiqc.modules.fastqc.fastqc [INFO ] Found 35 reports [2023-03-03 05:27:39,194] multiqc [DEBUG ] No samples found: pycoqc [2023-03-03 05:27:39,198] multiqc [DEBUG ] No samples found: minionqc [2023-03-03 05:27:39,201] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-03-03 05:27:39,204] multiqc [DEBUG ] No samples found: clusterflow [2023-03-03 05:27:39,207] multiqc [DEBUG ] No samples found: bcl2fastq [2023-03-03 05:27:39,210] multiqc [DEBUG ] No samples found: interop [2023-03-03 05:27:39,213] multiqc [DEBUG ] No samples found: ivar [2023-03-03 05:27:39,216] multiqc [DEBUG ] No samples found: flash [2023-03-03 05:27:39,219] multiqc [DEBUG ] No samples found: seqyclean [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-03-03 05:27:39,220] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-03-03 05:27:39,263] multiqc [INFO ] Compressing plot data [2023-03-03 05:27:39,934] multiqc [INFO ] Report : multiqc_report.html [2023-03-03 05:27:39,934] multiqc [INFO ] Data : multiqc_data [2023-03-03 05:27:39,935] multiqc [DEBUG ] Moving data file from '/state/partition1/job-30721269/tmpvz2p8l9c/multiqc_data' to '/scratch/gencore/logs/html/H7NTWBGXN/merged/multiqc_data' [2023-03-03 05:27:40,038] multiqc [INFO ] MultiQC complete