[2021-08-06 04:31:37,276] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-08-06 04:31:37,277] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-08-06 04:31:37,277] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-08-06 04:31:37,278] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-08-06 04:31:37,278] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-08-06 04:31:37,278] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7NLMDRXY/merged [2021-08-06 04:31:38,913] multiqc [WARNING] MultiQC Version v1.11 now available! [2021-08-06 04:31:38,913] multiqc [INFO ] This is MultiQC v1.9 [2021-08-06 04:31:38,913] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7NLMDRXY/merged [2021-08-06 04:31:38,913] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H7NLMDRXY/merged [2021-08-06 04:31:38,913] multiqc [INFO ] Template : default [2021-08-06 04:31:38,913] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-08-06 04:31:38,913] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H7NLMDRXY/merged [2021-08-06 04:31:38,914] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-08-06 04:31:38,914] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-9213371/tmp6a14judr [2021-08-06 04:31:39,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NLMDRXY_1_fastqc.html [2021-08-06 04:31:39,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NLMDRXY_1_fastqc.html [2021-08-06 04:31:39,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NLMDRXY_2_fastqc.html [2021-08-06 04:31:39,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NLMDRXY_2_fastqc.html [2021-08-06 04:31:39,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7NLMDRXY_3_fastqc.html [2021-08-06 04:31:39,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7NLMDRXY_3_fastqc.html [2021-08-06 04:31:39,509] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-08-06 04:31:39,510] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-08-06 04:31:39,514] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2021-08-06 04:31:39,517] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-08-06 04:31:39,522] multiqc [DEBUG ] No samples found: conpair [2021-08-06 04:31:39,527] multiqc [DEBUG ] No samples found: peddy [2021-08-06 04:31:39,532] multiqc [DEBUG ] No samples found: somalier [2021-08-06 04:31:39,538] multiqc [DEBUG ] No samples found: methylQA [2021-08-06 04:31:39,547] multiqc [DEBUG ] No samples found: mosdepth [2021-08-06 04:31:39,551] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-08-06 04:31:39,555] multiqc [DEBUG ] No samples found: qualimap [2021-08-06 04:31:39,560] multiqc [DEBUG ] No samples found: preseq [2021-08-06 04:31:39,565] multiqc [DEBUG ] No samples found: quast [2021-08-06 04:31:39,570] multiqc [DEBUG ] No samples found: qorts [2021-08-06 04:31:39,574] multiqc [DEBUG ] No samples found: rna_seqc [2021-08-06 04:31:39,579] multiqc [DEBUG ] No samples found: rockhopper [2021-08-06 04:31:39,584] multiqc [DEBUG ] No samples found: rsem [2021-08-06 04:31:39,596] multiqc [DEBUG ] No samples found: rseqc [2021-08-06 04:31:39,600] multiqc [DEBUG ] No samples found: busco [2021-08-06 04:31:39,605] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-08-06 04:31:39,611] multiqc [DEBUG ] No samples found: disambiguate [2021-08-06 04:31:39,617] multiqc [DEBUG ] No samples found: supernova [2021-08-06 04:31:39,630] multiqc [DEBUG ] No samples found: deeptools [2021-08-06 04:31:39,635] multiqc [DEBUG ] No samples found: sargasso [2021-08-06 04:31:39,640] multiqc [DEBUG ] No samples found: verifybamid [2021-08-06 04:31:39,644] multiqc [DEBUG ] No samples found: mirtrace [2021-08-06 04:31:39,649] multiqc [DEBUG ] No samples found: happy [2021-08-06 04:31:39,654] multiqc [DEBUG ] No samples found: mirtop [2021-08-06 04:31:39,660] multiqc [DEBUG ] No samples found: homer [2021-08-06 04:31:39,665] multiqc [DEBUG ] No samples found: macs2 [2021-08-06 04:31:39,669] multiqc [DEBUG ] No samples found: theta2 [2021-08-06 04:31:39,674] multiqc [DEBUG ] No samples found: snpeff [2021-08-06 04:31:39,681] multiqc [DEBUG ] No samples found: gatk [2021-08-06 04:31:39,686] multiqc [DEBUG ] No samples found: htseq [2021-08-06 04:31:39,691] multiqc [DEBUG ] No samples found: bcftools [2021-08-06 04:31:39,696] multiqc [DEBUG ] No samples found: featureCounts [2021-08-06 04:31:39,702] multiqc [DEBUG ] No samples found: fgbio [2021-08-06 04:31:39,714] multiqc [DEBUG ] No samples found: dragen [2021-08-06 04:31:39,719] multiqc [DEBUG ] No samples found: dedup [2021-08-06 04:31:39,724] multiqc [DEBUG ] No samples found: damageprofiler [2021-08-06 04:31:39,746] multiqc [DEBUG ] No samples found: biobambam2 [2021-08-06 04:31:39,751] multiqc [DEBUG ] No samples found: mtnucratio [2021-08-06 04:31:39,753] multiqc [DEBUG ] No samples found: picard [2021-08-06 04:31:39,758] multiqc [DEBUG ] No samples found: prokka [2021-08-06 04:31:39,762] multiqc [DEBUG ] No samples found: samblaster [2021-08-06 04:31:39,770] multiqc [DEBUG ] No samples found: samtools [2021-08-06 04:31:39,775] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-08-06 04:31:39,779] multiqc [DEBUG ] No samples found: bamtools [2021-08-06 04:31:39,783] multiqc [DEBUG ] No samples found: jellyfish [2021-08-06 04:31:39,791] multiqc [DEBUG ] No samples found: vcftools [2021-08-06 04:31:39,796] multiqc [DEBUG ] No samples found: longranger [2021-08-06 04:31:39,803] multiqc [DEBUG ] No samples found: stacks [2021-08-06 04:31:39,807] multiqc [DEBUG ] No samples found: varscan2 [2021-08-06 04:31:39,823] multiqc [DEBUG ] No samples found: bbmap [2021-08-06 04:31:39,828] multiqc [DEBUG ] No samples found: bismark [2021-08-06 04:31:39,833] multiqc [DEBUG ] No samples found: biscuit [2021-08-06 04:31:39,838] multiqc [DEBUG ] No samples found: hicexplorer [2021-08-06 04:31:39,843] multiqc [DEBUG ] No samples found: hicup [2021-08-06 04:31:39,847] multiqc [DEBUG ] No samples found: hicpro [2021-08-06 04:31:39,852] multiqc [DEBUG ] No samples found: salmon [2021-08-06 04:31:39,856] multiqc [DEBUG ] No samples found: kallisto [2021-08-06 04:31:39,864] multiqc [DEBUG ] No samples found: slamdunk [2021-08-06 04:31:39,868] multiqc [DEBUG ] No samples found: star [2021-08-06 04:31:39,875] multiqc [DEBUG ] No samples found: hisat2 [2021-08-06 04:31:39,879] multiqc [DEBUG ] No samples found: tophat [2021-08-06 04:31:39,884] multiqc [DEBUG ] No samples found: bowtie2 [2021-08-06 04:31:39,888] multiqc [DEBUG ] No samples found: bowtie1 [2021-08-06 04:31:39,893] multiqc [DEBUG ] No samples found: snpsplit [2021-08-06 04:31:39,897] multiqc [DEBUG ] No samples found: kat [2021-08-06 04:31:39,901] multiqc [DEBUG ] No samples found: leehom [2021-08-06 04:31:39,906] multiqc [DEBUG ] No samples found: adapterRemoval [2021-08-06 04:31:39,910] multiqc [DEBUG ] No samples found: clipandmerge [2021-08-06 04:31:39,914] multiqc [DEBUG ] No samples found: cutadapt [2021-08-06 04:31:39,918] multiqc [DEBUG ] No samples found: flexbar [2021-08-06 04:31:39,923] multiqc [DEBUG ] No samples found: kaiju [2021-08-06 04:31:39,928] multiqc [DEBUG ] No samples found: kraken [2021-08-06 04:31:39,933] multiqc [DEBUG ] No samples found: malt [2021-08-06 04:31:39,937] multiqc [DEBUG ] No samples found: trimmomatic [2021-08-06 04:31:39,941] multiqc [DEBUG ] No samples found: sickle [2021-08-06 04:31:39,946] multiqc [DEBUG ] No samples found: skewer [2021-08-06 04:31:39,950] multiqc [DEBUG ] No samples found: sortmerna [2021-08-06 04:31:39,954] multiqc [DEBUG ] No samples found: biobloomtools [2021-08-06 04:31:39,958] multiqc [DEBUG ] No samples found: fastq_screen [2021-08-06 04:31:39,962] multiqc [DEBUG ] No samples found: afterqc [2021-08-06 04:31:39,967] multiqc [DEBUG ] No samples found: fastp [2021-08-06 04:31:40,051] multiqc.modules.fastqc.fastqc [INFO ] Found 3 reports [2021-08-06 04:31:40,099] multiqc [DEBUG ] No samples found: pycoqc [2021-08-06 04:31:40,103] multiqc [DEBUG ] No samples found: minionqc [2021-08-06 04:31:40,108] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-08-06 04:31:40,113] multiqc [DEBUG ] No samples found: clusterflow [2021-08-06 04:31:40,118] multiqc [DEBUG ] No samples found: bcl2fastq [2021-08-06 04:31:40,124] multiqc [DEBUG ] No samples found: interop [2021-08-06 04:31:40,129] multiqc [DEBUG ] No samples found: ivar [2021-08-06 04:31:40,133] multiqc [DEBUG ] No samples found: flash [2021-08-06 04:31:40,137] multiqc [DEBUG ] No samples found: seqyclean [2021-08-06 04:31:40,138] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-08-06 04:31:40,138] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-08-06 04:31:40,138] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-08-06 04:31:40,142] multiqc [INFO ] Compressing plot data [2021-08-06 04:31:40,195] multiqc [INFO ] Report : multiqc_report.html [2021-08-06 04:31:40,195] multiqc [INFO ] Data : multiqc_data [2021-08-06 04:31:40,195] multiqc [DEBUG ] Moving data file from '/state/partition1/job-9213371/tmp6a14judr/multiqc_data' to '/scratch/gencore/logs/html/H7NLMDRXY/merged/multiqc_data' [2021-08-06 04:31:40,318] multiqc [INFO ] MultiQC complete