FastQCFastQC Report
Wed 18 Nov 2015
H7NJ7BCXX_l02n02_lhmp-extraction-control-mss.3520000003e1fd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7NJ7BCXX_l02n02_lhmp-extraction-control-mss.3520000003e1fd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7219
Sequences flagged as poor quality0
Sequence length251
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATATG100.002148422214.645834
GGGGGGG251.7027669E-6149.86182225-229
GAATTAT150.00722617143.097231
AAAAAAA5151.0407649E-414.549691225-229
Produced by FastQC (version 0.11.2)