FastQCFastQC Report
Wed 18 Nov 2015
H7NJ7BCXX_l02n01_lhmp-extraction-control-mss.3510000003e1f0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7NJ7BCXX_l02n01_lhmp-extraction-control-mss.3510000003e1f0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7219
Sequences flagged as poor quality0
Sequence length251
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTATA150.004868409163.300931
TCACGAG150.004868409163.300932
ACGAGGT150.004868409163.300934
TCCTGAC150.004868409163.300933
CAAACTA150.00906759948.99028150-154
TTTTTTT3001.1723426E-48.98155180-84
Produced by FastQC (version 0.11.2)