FastQCFastQC Report
Wed 18 Nov 2015
H7NJ7BCXX_l01n02_34311-1-mss.3520000003c80b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7NJ7BCXX_l01n02_34311-1-mss.3520000003c80b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8555
Sequences flagged as poor quality0
Sequence length251
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTGCAT50.00252256261756.15245
GAAGCGG100.0012888991254.5145225-229
GTCTTGA100.0024592364205.397661
GCCTGAA150.008270218136.931761
AATCGAC150.00984518447.98224100-104
CCCCCCC750.001878762916.967632225-229
Produced by FastQC (version 0.11.2)