H7LNCBGXH_n01_JK24.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H7LNCBGXH_n01_JK24.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12305094
Sequences flagged as poor quality	0
Sequence length	76
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTAT	2022367	16.435201551487538	TruSeq Adapter, Index 7 (97% over 36bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	580438	4.717054579184849	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGG	23726	0.19281445554174556	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	19552	0.15889354441339498	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	218885	68.038086	46
ATGCCGT	217425	68.01041	49
ACGAGTG	221725	68.00526	32
CTCGTAT	218660	67.96807	44
CGAGTGG	221240	67.95296	33
GTATGCC	219195	67.94477	47
GCCGTCT	214305	67.92141	51
TATGCCG	218060	67.91054	48
TGCCGTC	217705	67.8951	50
AGTCACG	224880	67.88715	28
TCGTATG	219340	67.86718	45
CACGAGT	222665	67.856026	31
GGATATC	221125	67.79277	38
GTCACGA	224520	67.77124	29
GTGGATA	221225	67.7611	36
TCACGAG	224210	67.66558	30
TATCTCG	220815	67.60114	41
TCTCGTA	220380	67.57177	43
CCGTCTT	215860	67.556274	52
GAGTGGA	222060	67.544754	34