H7LNCBGXH_n01_AKM146.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H7LNCBGXH_n01_AKM146.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14924671
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC	1093745	7.328436251626585	TruSeq Adapter, Index 3 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCGCGTATGC	61048	0.40904084250835415	TruSeq Adapter, Index 3 (98% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	30100	0.20167948760813556	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGGATGC	25116	0.16828511663674195	TruSeq Adapter, Index 3 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATTC	24707	0.16554468771874434	TruSeq Adapter, Index 3 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTTTGC	17265	0.11568094197855351	TruSeq Adapter, Index 3 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATGTCGTATGC	16629	0.11141954150949124	TruSeq Adapter, Index 3 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	126745	67.909164	44
GTATGCC	127895	67.77721	45
CTCGTAT	121310	67.63016	42
TCGTATG	120830	67.587746	43
TATGCCG	125350	67.54251	46
GCCGTCT	111240	67.14469	49
AGGCATC	145150	67.04202	36
ATGCCGT	117425	66.964455	47
GGCATCT	131880	66.95753	37
GCATCTC	131120	66.8836	38
TCTCGTA	123460	66.84079	41
TGCCGTC	114665	66.77484	48
CCGTCTT	114235	66.689186	50
ACTTAGG	155970	66.55678	32
CACTTAG	156615	66.50615	31
CATCTCG	131320	66.3604	39
ATCTCGT	127410	66.18757	40
TTAGGCA	155240	66.13674	34
TAGGCAT	153745	66.12536	35
CTTCTGC	120695	65.427155	54