FastQCFastQC Report
Sat 4 Mar 2023
H7K2HBGXN_n01_JK162b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7K2HBGXN_n01_JK162b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15160156
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC14233029.388439010785905TruSeq Adapter, Index 6 (100% over 50bp)
CCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCC367870.2426558143596939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)