FastQCFastQC Report
Mon 13 Feb 2023
H7K22BGXN_n01_br318a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7K22BGXN_n01_br318a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66371742
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT1838570.2770109604777286TruSeq Adapter, Index 2 (97% over 37bp)
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG1444300.21760766803438727No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG1161890.1750579335404516No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC1064400.16036945361476276No Hit
GTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACT681550.10268677293418034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)