FastQCFastQC Report
Thu 12 Sep 2019
H7JYGBGXC_n01_dpErk_WE_514hpf_H1_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7JYGBGXC_n01_dpErk_WE_514hpf_H1_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24356502
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA47350.017.4966451
GCCCGAA33950.016.4303931
CTGGACG37800.016.3577791
GGGCTAC38600.015.0496511
GAAGCCC53200.014.9522481
GAGACCC50600.014.7855741
CGAAAAG25250.014.7247733
GGGACCT35500.014.7212631
AAACCCA40400.014.705921
AGCCACG50500.014.6623471
AATGGAA54950.014.6362371
TGCGACG40900.014.6337431
AAACGAA42650.014.6008171
AGCGCCA53200.014.5593111
TGCGGAG33650.014.5468243
AAACGCT45300.014.4995961
TCGAGAA47750.014.4202818
ATGGGAG36800.014.3806021
CCCGAAG40950.014.3740671
AACGGGA29800.014.361941
Produced by FastQC (version 0.11.5)