FastQCFastQC Report
Thu 12 Sep 2019
H7JYGBGXC_n01_dpErk_WE_514hpf_H1_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7JYGBGXC_n01_dpErk_WE_514hpf_H1_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22006399
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA45600.017.3223781
GCCCGAA32300.016.2807081
CTGGACG30500.015.5101691
GGGCTAC33650.015.4313821
AAACGCT39450.015.3935921
AGCCACG46050.015.0985541
AATGGAA48000.015.0123261
GAGACCC44700.014.9146471
GGGATCC38850.014.61189651
TCGAGAA39900.014.6108638
GCGGAAA31050.014.597671
GGGACCT31750.014.5183811
AAACCCA41600.014.4657811
GAAGCCC46450.014.4474771
TGCGACG39450.014.3896621
AACGGGA27700.014.377281
ATACCGA37100.014.3522291
ATGGGAG32850.014.3336341
GGCACGT38700.014.3274031
AGGCTGC40100.014.2387171
Produced by FastQC (version 0.11.5)