FastQCFastQC Report
Thu 12 Sep 2019
H7JYGBGXC_n01_dpErk_WE_514hpf_G1_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7JYGBGXC_n01_dpErk_WE_514hpf_G1_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21021970
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA42100.016.907811
GCCCGAA28250.016.7851031
GGGCTAC34250.015.4507551
GAGACCC39800.015.3970431
CTGGACG31000.015.2606121
AAACGAA37900.014.8626381
AAACCCA37700.014.8247561
AAACGCT37950.014.7850771
GGGACCT28400.014.7595061
AATGGAA48750.014.6691151
GGCACGT36850.014.5695961
GAAGCCC43700.014.5516291
ATGGGAG34150.014.4650791
TGCGACG34400.014.4559011
GAACGAG27900.014.3905853
TGCGGAG26450.014.38931753
CGCTGAG25900.014.3551163
GGGCCAT38350.014.3439861
AGCGCCA43850.014.3262221
AGCCACG43350.014.263051
Produced by FastQC (version 0.11.5)