FastQCFastQC Report
Thu 12 Sep 2019
H7JYGBGXC_n01_dpErk_WE_514hpf_G1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7JYGBGXC_n01_dpErk_WE_514hpf_G1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19858766
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA40150.017.4275991
GCCCGAA27600.015.8251351
GGGCTAC33100.015.7216871
CTGGACG30450.015.7169381
GGGACCT29850.015.1482861
AGCCACG39950.015.0087921
AGGGAAG21300.014.9764893
GAAGCCC46550.014.9606361
GAGACCC40150.014.9340281
GGCACGT35300.014.8353661
AAACGCT35750.014.80251
AAACCCA33750.014.7995361
AATGGAA44400.014.6443631
AAACGAA37200.014.6099931
CCCGAAG31750.014.5882891
ATGGGAG30600.014.5612821
AGCGCCA46050.014.4780131
TCGGGAC29100.014.4044941
AGTAAAC33400.014.3914588
TTGACCC35950.014.352911
Produced by FastQC (version 0.11.5)