FastQCFastQC Report
Thu 12 Sep 2019
H7JYGBGXC_n01_dpErk_WE_514hpf_E1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7JYGBGXC_n01_dpErk_WE_514hpf_E1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19807172
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA38450.017.0533051
GCCCGAA26250.016.2615171
CTGGACG29150.015.775981
AAACGAA36350.015.7382911
GGGACCT29850.015.1848861
GGGCTAC33200.015.0113151
TGGAACT37450.014.8647411
GAGACCC41400.014.6954681
AAACGCT36700.014.6888791
AGCCACG42550.014.5827071
TTGACCC39600.014.5299841
TGCGACG36100.014.5063561
GAAGCCC41750.014.4932181
AGGCTGC35700.014.36072351
GCGGAAA25600.014.3537421
AAACCCA35150.014.3350351
AATGGAA44600.014.2331031
TCGAGAA36400.014.2329478
CATGACG29550.014.2193978
ATGGGAG30200.014.1345961
Produced by FastQC (version 0.11.5)