FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n02_pIXHALO_c24_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n02_pIXHALO_c24_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3024943
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC2801.0913936E-1118.74977744
CACGGGC1901.1345191E-414.73749
GCCTAAG23850.014.38114455
CCCGATC13850.014.150990542
CAACCCG12600.013.61072539
CCGATCT15750.013.55494743
AAACCGC31650.012.93780933
ACCGCAA30700.012.76815735
CCTAAGT27150.012.7620756
AGCCTAA27200.012.73839954
AAGCCTA26600.012.63101253
AACCGCA33300.012.50694634
ACCCGAT14650.012.4226541
CCTTGTT32300.012.24383170
CGCAACC24200.012.14821637
CCGCAAC28000.012.12445636
ACGGGCA2050.003345153811.95285710
AGGCGTA12650.011.89669953
AGGGGGG2651.4072246E-411.88606268
CGCGTTC2100.00401200511.66575730
Produced by FastQC (version 0.11.5)