FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n02_WRKY40_col_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n02_WRKY40_col_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1369465
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG5150.016.98898970
AGAGCGG7550.015.2968470
GAGCGTG2553.9059705E-715.09688270
CGGAAGC8700.013.67711270
GCTTGGC2200.005662409611.13835612
TCGTGGG3802.7998867E-611.05178470
GTAGGGG4905.253569E-79.99923370
GAGGGGA4602.5333902E-69.89054669
GGAGGGG5007.32234E-69.09930268
GGTGGGG3854.2846127E-49.09021370
GGGAAAC3550.00207558468.87255970
GCGAGCT3200.0088583738.75188516
GTTGGGA7654.794674E-88.23466367
GTAGGGA18100.07.54085869
AGGGGAA7552.8598242E-67.4166570
TCGTGTT17100.07.36785670
AGTGTAG10453.0649971E-97.36785670
TAGGGAA17650.07.33654870
GAGTGTT7451.8855524E-57.046439670
GAAGAGG8652.9280545E-66.878085670
Produced by FastQC (version 0.11.5)