FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n02_WOX11_col_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n02_WOX11_col_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1722822
Sequences flagged as poor quality0
Sequence length76
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGGCC200.00694924952.50644319
GCGTCGG459.2081726E-538.88575770
AGTGTAG8758.185452E-118.79929369
TCGTGGT3700.00302156188.51282870
GGGAAAG15550.07.876950767
GGAGGGA4100.00761134047.682085564
GAGTGTA10007.9153324E-86.999437368
GTGTAGA8954.994685E-66.6475170
GGAAAGA21650.06.627642668
TGTAGGG20550.06.301196669
GTGTAGG22800.06.293353670
GTAGGGA16752.3646862E-116.267970664
TCGTGTT8953.5468733E-56.2564870
AGAGTGT12305.198399E-75.97512969
AGGGAAA22050.05.87237366
GTCGTGG9253.7272353E-45.67505465
AAGAGTG14302.4727524E-75.62875466
CGTGTAG24250.05.628249667
GAAAGAG22601.8189894E-125.57477369
TCGTGTA32950.05.522916367
Produced by FastQC (version 0.11.5)