FastQCFastQC Report
Tue 13 Nov 2018
H7HWGAFXY_n02_LHY1_c24_b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n02_LHY1_c24_b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29
Sequences flagged as poor quality0
Sequence length76
%GC27

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTTTGGATTTTCAATTATATTTTGTGTATTATTATTTTAACTGAATCT13.4482758620689653No Hit
ATTAACGATTCAAGTTCATTTTCATGGAATTAGATATTTTATTAAAAATA13.4482758620689653No Hit
CCACATATATGGAAAAAAAACCACAGGTCGATTAGTTACCTTTCGCGATT13.4482758620689653No Hit
TTATGCTATATACAAAACATCTAATGAAGATATTAATACATCTAATTCAT13.4482758620689653No Hit
ATATTCATGATGAATTTTTTAATTGTTTCGAAAAAATAATGAAAATTAAA13.4482758620689653No Hit
TTAGGAGATTTTTGACATATGCGCAACCTTTTTACAGTATACTATTACCT13.4482758620689653No Hit
ATCTCGGTTCGAGTCCGAGTAGCGGCATAAGATCTTCTAAAAGAGATATT13.4482758620689653No Hit
TAAATATAGCTAAACAAATCAAGATAAAAGAAGTCCTAGATACCTAAAAT13.4482758620689653No Hit
AAATATTATATTAGAACCTTGATAGACATTTGTGATTTGGACTTTAAACG13.4482758620689653No Hit
AAACTGGTTATTTACTCCGACATTGACCAACAAAAAAATTCAAAAAAATC13.4482758620689653No Hit
CTCACTCATTAAGCCCCAAGAAGGCAGAGACTATTTACATAGTAATATCA13.4482758620689653No Hit
AAGTACAAATGCATATTATTTGTACGAATGGTCGTTTCCTAATATCAAGC13.4482758620689653No Hit
ACTACTCCAACTAAATAAATATCTTGAATTTTGCTTTAAAAAAAACGATT13.4482758620689653No Hit
ATATGTATATATAAATCTGGTTAGACATGAAAGATGAATTATATTCGCTC13.4482758620689653No Hit
TATTAATAACAACATAAACCTGATTAACCATATAACCTCGTCCAGTGAAA13.4482758620689653No Hit
CAACCTTCTTCTAGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCAGA13.4482758620689653No Hit
GAAGATAAGTATGAACGAAGATATTACGAATACTATAGTATATATATTAT13.4482758620689653No Hit
AACCACAATAACAAATAATTAAATATTTGATCATTTAAAAATCTTCCCAA13.4482758620689653No Hit
TTACATTTTCTATTCTAGGTGATTTTGATTTATTTTTAAATGATCAATGA13.4482758620689653No Hit
TACAAAATAGCTGTAAATAGATAATTTTAAAATCGTATCTTATGATTTTT13.4482758620689653No Hit
ATTTGAGCCACTCCTCCTAAAATGTCTTCTAGAGACATTTAGAGATGAAA13.4482758620689653No Hit
TTCACTAATATGAGAAAATCCTATTATTCACCCTTTAATAAATCAGAATA13.4482758620689653No Hit
CAATAACTCAAAAGTGTATCATGCCTGAATCTAACTGGAGTTCGCGGTGG13.4482758620689653No Hit
GGAGAATGTTTTAGACAGTTTCATGATTTAGATATTTTGGCTCGAATTAC13.4482758620689653No Hit
TATAAGTTAATAAGGGGACAGCCATTTTCTAGACTCCATAATAAGTATTC13.4482758620689653No Hit
CTCGATTCTCTTTTTCGGATCAGCTCTAATGTTTTATTTGGCCATACTTC13.4482758620689653No Hit
CCAGAAGATATTTGTCAGTGATGATTGCTGATGACGCATCATAAGATTGA13.4482758620689653No Hit
AAGATATCTACAAGTTTTCAAATAATAAGATAAAATTTATAATATAAATG13.4482758620689653No Hit
TGGAACACACAAATTTTTCTGAAGAATTCTCCTTGATATATCTAATCCAT13.4482758620689653No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)