FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n02_LHY1_c24_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n02_LHY1_c24_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2671004
Sequences flagged as poor quality0
Sequence length76
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAAGC2903.2524066E-410.86038470
GTGTAGG11951.4551915E-117.61388170
CGTGTAG14600.07.190665269
CGACGGA5450.00165689067.06563813
GTAGGGA8006.803506E-66.998914269
GTCGTGG6208.65936E-46.77314370
TGTAGGG10551.4780562E-66.3023468
TCAGTTG6150.00588659666.26118412
CGTCGTG25250.06.236656768
TCGTGTT8003.6065755E-46.124049770
GTCGTGT20800.06.05675268
AGAGCGT36300.05.977033670
TCGTGTA20503.6379788E-125.80397869
GCGTCGT27200.05.789109767
AGCGTCG29850.05.74450270
AAGAGCG41150.05.527696669
GAGCGTC32350.05.51691870
GGGAAAG8700.0064422375.2287864
GAAGAGC46450.05.19833370
GGAAGAG51550.05.02346970
Produced by FastQC (version 0.11.5)