FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_pIXHALO_col_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_pIXHALO_col_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1665609
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGCGC850.003791742320.58797825
TCGCGCT950.00721244618.42082426
CACACGG3352.6448106E-914.62668470
GTACCCG1500.00592657814.003611
ACCCGAT5900.012.45747341
CCCGATC6250.012.31984642
CAACCCG6050.012.14860939
AGGCGTA5054.783942E-1011.78203253
CCAGTCC2903.2467296E-410.86193570
CGGAAGC7151.8189894E-1210.76909770
GAGCACC5653.072273E-910.53084370
CGCAACC11600.010.25849337
AAGGCGT5159.472933E-810.19404852
GCAACCC7859.094947E-129.80879538
AACCGCA15450.09.74097934
ACCGCAA14200.09.61255635
CCGCAAC14300.09.54533737
GCGCACA2950.0045495679.49140758
GGCGTAA6008.712232E-89.33321854
AACCCGA7901.0004442E-109.30368140
Produced by FastQC (version 0.11.5)