FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_pIXHALO_c24_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_pIXHALO_c24_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3024943
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGGGG900.00527922819.44418150
CGCACCC2108.5949796E-716.66644337
CCAGTCC5900.015.42377670
CCCGATC13350.013.63277442
CAACCCG12000.013.12482439
CCGATCT14950.012.40785943
CCTTGTT33200.012.01810970
ACCCGAT13500.011.6665141
GCCTAAG27250.011.55947855
GCCGTCA18050.011.0550411
GTAGTGT27050.010.99800361
GCAACCC14750.010.91510738
TCCTTGT36100.010.85875969
CCTAAGT27750.010.84670156
CGCAACC23600.010.82612537
ACCCGTA4551.8990977E-710.76908635
AAACCGC32500.010.66139533
ACTCCCG3954.454221E-610.63276822
CGGAAGC12200.010.61478770
AGCCTAA30200.010.43032454
Produced by FastQC (version 0.11.5)