FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_c24dna_daplib_dapv1-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_c24dna_daplib_dapv1-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences983300
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGGGG1700.041.17617449
ATGGGGG4600.038.8040740
TCCATGG13550.037.453637
CATGGGG5800.037.4135239
GTTCCAT22200.037.36459435
CAGGGGG1151.8189894E-1236.52147739
TTCCATG18500.035.75649636
CCATGGC6150.035.28429438
CCGGGTG1300.034.9997551
AGTTCCA30250.034.2476934
CGGCGTG1154.0017767E-1133.4780251
CATGGCG5500.033.09066839
TTCCAGG4450.033.0334736
CGGGGTG2650.033.0186351
CATCGCG1109.076757E-1031.8179539
CCATGGG8300.031.62627838
CAGTTCC37000.031.40517633
TGCGGCG802.4682668E-630.62477749
TCCAGGG3000.030.33311337
GCGGGGT2100.029.9997850
Produced by FastQC (version 0.11.5)