FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_WRKY40_col_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_WRKY40_col_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1369465
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCCCT1003.9277502E-421.0050741
GAGCACC4400.020.68152870
CCCCTGT1250.001761270816.8022172
CACACGG1605.16357E-415.31228470
TAGGCAG2505.2658397E-613.99980470
ACTGAGG1950.002300904812.56392746
AAGAGCC5853.6379788E-1211.96564370
TAGGCAT5401.1823431E-1011.66650267
GGCATCG2150.00477777311.39518869
TTAGGCC2600.001595999910.76907970
GGCATGG3004.4399474E-410.49985269
GCATGGG3208.040291E-49.84361270
ACACGTA2900.0039501529.65503670
CGGAAGC6603.8471626E-99.5453270
TTGCCCA2950.00454327939.4927792
CAGTCAC26200.09.35101370
TTAGGCA9101.8189894E-129.23063966
CACTTAG15000.09.09987270
AGGCATG3904.871248E-48.97423468
GTCACTT20650.08.81343670
Produced by FastQC (version 0.11.5)