FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_WOX11_c24_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_WOX11_c24_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3202405
Sequences flagged as poor quality0
Sequence length76
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCACC5050.019.40663770
CCAGTCC3201.3860699E-915.3130570
CGGAAGC6550.014.42799970
CACACGG2250.00670323710.88927970
AAGAGCC9100.010.76961770
AGTCACC20200.010.2231470
CAGTCAC22650.08.80826469
TCCAGTC28850.08.73514870
CTCCAGT33050.08.36641270
TCACCAG16550.08.24803170
CACCAGA15050.08.13982769
GAACTCC43550.07.956657470
GTCACCA19000.07.737119769
CCAGTCA25900.07.56783969
ACTCCAG35650.07.461698569
CCCCATA4750.0034133317.36995171
ACCAGAT21050.07.31617770
GTCTGAA68900.06.90881170
TCTGAAC63100.06.82274970
CGTCTGA71400.06.8139769
Produced by FastQC (version 0.11.5)